Table 1.
Significantly (P < 0.05) enriched metabolic pathways in KEGG and REACTOME. Differentially expressed genes (DEG) and differentially abundant proteins (DAP) involved in each pathway resulted from transcriptomic and proteomic analyses in proventriculus of fast (FG) vs slow (SG) growing chickens
Experiment | Enriched Biological Pathway | Upregulated DEG or DAP | Databasea | P value | |
---|---|---|---|---|---|
Upregulated in SG | Upregulated in FG | ||||
Transcriptomic analysis | Glyoxylate Metabolism and Gly Degradation | DLAT, PDHB, PDHX, LIAS, OGDH | none | REACTOME | 0.014 |
Pyruvate Metabolism | DLAT, PDHB, PDHX | none | REACTOME | 0.030 | |
Proteomic analysis | Translocation of GLUT4 to membrane | none | YWHAE, YWHAQ, YWHAZ | REACTOME | 0.016 |
The Tricarboxylic Acid Cycle | SDHA, SDHB | CS | REACTOME | 0.001 | |
Glycolysis | TPI1 | ENO1, PKM | REACTOME | 0.029 | |
Gluconeogenesis | GOT1, TPI1 | ENO1 | REACTOME | 0.046 | |
Biosynthesis of Amino Acid | GOT1, PKM, TPI1 | CS, ENO1, PRPS2 | KEGG | 0.003 | |
Arg and Pro Metabolism | none | AGMAT, CKB, CKM, CKMT1A, GOT1 | KEGG | 0.005 |
Abbreviations: AGMAT Agmatinase, Arg arginine, CKB M Creatine Kinase Brain, Muscle, CS Citrate synthase, DAP Differentially abundant proteins, DEG Differentially expressed genes, DLAT dihydrolipoamide S-acetyltransferase, ENO1 Enolase 1, GLUT4 glucose transporter 4, Gly glycine, GOT1 Glutamic-oxaloacetic transaminase 1, LIAS Lipoic acid synthetase, OGDH oxoglutarate (α-ketoglutarate) dehydrogenase, PDHB pyruvate dehydrogenase (lipoamide) beta, PDHX pyruvate dehydrogenase complex component, PKM Pyruvate Kinase, Pro proline, PRPS2 Phosphoribosyl pyrophosphate synthetase 2, SDHA, B Succinate dehydrogenase complex flavoprotein subunit A, B, TPI1 Triosephosphate isomerase 1, YWHAE, Q, Z Tyrosine 3-monfooxygenase/ tryptophan 5-monooxygenase activation protein epsilon, theta, zeta
aThe reference for the databases used in the study are: KEGG (Kanehisa and Goto, 2000), REACTOME (Lewis et al., 2005)