Table 1.
Statistics for carnation ‘Scarlet Queen’_v1.0 genome and ‘Francesco’_r1.0 draft genome
| ‘Scarlet Queen’ | ‘Francesco’ | |
|---|---|---|
| Sequencing | ||
| ONT | ~60.65G | * |
| Illumina‐Short | ~48.86G | * |
| Illumina‐HIC | ~81.70G | * |
| Assembly | ||
| Contig N50 | 14.67 Mb | 17.55 kb |
| Contig N90 | 4.53 Mb | 2.68 kb |
| scaffolds N50 | 38.55 M | 62.62 kb |
| scaffolds N90 | 30.95 M | 8.0 kb |
| Longest contig | 34.83 Mb | 1.29 kb |
| Number of contigs | 75 | 88,654 |
| Number of scaffolds | 61 | 45088 |
| De‐redundancy total | 636.30 Mb | 568.89 Mb |
| BUSCO | 97.15% | – |
| Total GC content (%) | 38% | 36% |
| TE | 70.62% | 53.96% |
| Heterozygotic | 1.2% | 0.2% |
| Annotation | ||
| Number of predicted genes | 43925 | 43266 |
| Swiss‐prot | 21700 (49.4%) | * |
| Interproscan | 37656 (85.73%) | * |
| GO | * | 16423 (37.8%) |
| NR | 21133 (48.11) | * |
| KOG | 13896 (31.64%) | 19005 (43.7%) |
| Annotated | 40332 (91.82%) | * |
| Unannotated | 3593 (8.18%) | * |
| BUSCO | 95% | 82.1% |