TABLE 3.
Types of transposable elements identified in P. granatum genome. The total interspresed repeats mentioned at the bottom of the table 26.68 is the total of retroelements (13.69), DNA transposons (11.23) and unclassified (1.76) Hence these values are highlighted.
| Types of Transposable element | Number of elements | Length occupied in bp | Percentage of sequences |
|---|---|---|---|
| Retroelements | 112,404 | 49,529,468 | 13.69 |
| SINEs | 13,048 | 1,498,787 | 0.41 |
| LINEs | 25,893 | 6,693,226 | 1.85 |
| (i) CRE/SLACS | 0 | 0 | 0 |
| (ii) L2/CR1/Rex | 0 | 0 | 0 |
| (iii)R1/LOA/Jockey | 21 | 5,707 | 0 |
| (iv) R2/R4/NeSL | 0 | 0 | 0 |
| (v)RTE/Bov-B | 0 | 0 | 0 |
| (vi)L1/CIN4 | 3,843 | 1,720,126 | 0.48 |
| LTR elements | 73,463 | 41,337,455 | 11.43 |
| (i) BEL/Pao | 0 | 0 | 0 |
| (ii) Ty1/Copia | 8,660 | 5,573,403 | 1.54 |
| (iii) Gypsy/DIRS1 | 3,262 | 2,504,146 | 0.69 |
| (iv) Retroviral | 0 | 0 | 0 |
| DNA transposons | 182,314 | 40,633,158 | 11.23 |
| (i) hobo-Activator | 683 | 418,562 | 0.12 |
| (ii) Tc1-IS630-Pogo | 24 | 11,586 | 0 |
| (iii) En-Spm | 0 | 0 | 0 |
| (iv) MuDR-IS905 | 0 | 0 | 0 |
| (v) PiggyBac | 0 | 0 | 0 |
| (vi) Tourist/Harbinger | 954 | 607,183 | 0.17 |
| (vii) Other (Mirage,P-element, Transib) | 0 | 0 | |
| Rolling-circles | 835 | 750,813 | 0.21 |
| (i)Unclassified | 30,347 | 6,356,886 | 1.76 |
| Total interspersed repeats | 96,519,512 | 26.68 |