Table 2.
Project information and genomic features of draft genome sequences of different isolates of P. viticola.
| Property | Strain | INRA_Pvit_2 | JL-7-2 | PvitFEM01 |
|---|---|---|---|---|
| Sequencing technology | PacBio | Illumina HiSeq; PacBio | Illumina | |
| Mean coverage | 185.0x | 207.0x | 164.0x | |
| Assembly method | PBcR v. wgs8.3rc2 | AllPaths v. DEC-2015; PBJelly2 v. MAY-2016 | Ray v. JANUARY-2014 | |
| Assembly level | Scaffold | |||
| BIOPROJECT | PRJNA329579 | PRJNA361333 | PRJNA380033 | |
| BioSample | SAMN05415085 | SAMN06231250 | SAMN06627059 | |
| Source material identifier (host) | Leaves (V. vinifera) | Leaves (V. labrusca) | Leaves and spores (V. vinifera) | |
| Project relevance | Agriculture | |||
| Geographic location | France: Blanquefort | China: Jilin province | Italy: San Michele all'Adige | |
| Size | 92.94 Mb | 101.30 Mb | 83.54 Mb | |
| G+C content (%) | 44.80 | 37.50 | 42.40 | |
| Number of scaffolds | 358 | 2,165 | 57,890 | |
| Scaffold N50 | 706,521 | 172,266 | 4,645 | |
| Scaffold L50 | 38 | 172 | 3,777 | |
| Number of contigs | 374 | 23,193 | 65,120 | |
| Contig N50 | 666,562 | 14,258 | 2,161 | |
| Contig L50 | 41 | 1,201 | 7,173 | |
| GenBank ID | MBPM00000000 | MTPI00000000 | NBAH00000000 | |
| References | Dussert et al., 2016, 2019 | China Agriculture University | Brilli et al., 2018 | |