Fig. 2.

Docking analysis of the proposed 9-mer epitopes with MHC class I molecule. Docking of the epitope for (A) envelope protein, CVEnvA1 with the allele HLA-A*02:03 (3ox8), (B) membrane glycoprotein, CVMemB1 with the alleles HLA-A*68:01 (6PBH), (C) S1 domain of Spike surface glycoprotein, CVS1A1 with alleles HLA-C*07:02 (5VGE), and (D) S2 domain of spike surface glycoprotein, CVS2B1 with the alleles HLA-A*11:01 (6JP3). (i) Showing the cartoon view. (ii) Representing the interaction between the amino acid residues of HLA and the peptide. The cluster density, average RMSD, maximum RMSD, and elements involved also described right side of the respective docked figure