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The flexibility of the complex assessed by root mean square fluctuation (RMSF) per residue in molecular dynamic simulation study. A Epitope for envelop protein (i) Env-MHC-I, (ii) Env-MHC-II; (B) epitope for membrane protein (i) Mem-MHC-I, (ii) Mem-MHC-II; (C) epitope for S1 domain of surface glycoprotein (i) S1-MHC-I, (ii) S1-MHC-II; (D) epitope for S2 domain of surface glycoprotein (i) S2-MHC-I, (ii) S2-MHC-II
