TABLE 5.
Sequence similarity of tDNAs found in 16S-23S rRNA intergenic spacer regions of V. cholerae and V. mimicus
| ISR and tDNA | Matching organism(s) | % Similaritya |
|---|---|---|
| ISR-1 | ||
| tDNAGlu(UUC) | Aeromonas salmonicida | 93.4 (5/76) |
| Aeromonas hydrophila | 93.3 (5/75) | |
| Plesiomonas shigelloides, Escherichia coli, Klebsiella pneumoniae | 92.1 (6/76) | |
| tDNALys(UUU) | Escherichia colib | 90.7 (7/75) |
| Synechocystis sp.b | 77.3 (14/75) | |
| Mycoplasma sp.b | 76.3 (16/75) | |
| tDNAVal(UAC) | Haemophilus influenzaeb | 94.7 (4/76) |
| Acholeplasma laidlawii,bEscherichia coli,bPseudomonas aeruginosab | 85.5 (11/76) | |
| ISR-2 | ||
| tDNAIle(GAU) | Aeromonas hydrophila | 94.8 (4/77) |
| Bacillus subtilis, Haemophilus influenzae, Actinobacillus pleuropneumoniae | 93.5 (5/77) | |
| tDNAAla(UGC) | Aeromonas hydrophila, Escherichia coli | 96.1 (3/76) |
| Haemophilus influenzae | 94.7 (4/76) | |
| ISR-3 | ||
| tDNAGlu(UUC) | Identical to tDNAGlu(UUC) found in ISR-1 | |
| tDNAAla(GGC)c | Escherichia colib | 97.4 (2/76) |
| Aeromonas hydrophila,eEscherichia colie | 93.4 (5/76) | |
| tDNAAla(UGC)d | Vibrio cholerae, Vibrio mimicuse | 98.7 (1/76) |
| Escherichia coli, Aeromonas hydrophila | 97.4 (2/76) | |
| tDNAAla(UGC)f | Escherichia coli, Salmonella enterica | 96.1 (3/76) |
| Vibrio choleraee | 94.7 (4/76) | |
| Haemophilus influenzae, Pseudomonas syringae | 92.1 (6/76) |
a
Numbers of different nucleotides/total nucleotides compared are given in parentheses.
b
tDNAs recovered from non-ISR.
c
Obtained from strains RC2, RC5, and RC55.
d
Obtained from strain RC25.
e
tDNAAla(UGC) found in ISR-2.
f
Obtained from strain RC44.