Table 5.
Comparison of our study with recent ovine CNVR reports.
| References | Assembly | Algorithm(s) | Platform | Sample size | Length range(kb) | CNVR count | Average length (kb) | Genome coverage (%) | Overlapping with this study (%) |
|---|---|---|---|---|---|---|---|---|---|
| This study | OaiAri3.1 | PennCNV | OvineSNP50K | 175 | 11.7–705.6 | 483 | 146.89 | 2.6 | – |
| Fontanesi et al. (2011) | Btau_v4.0 | Bovine aCGH385k | 11 | 5.05–4.6 | 135 | 77.6 | 0.62 | ||
| Liu et al. (2013) | OaiAri1 | PennCNV | OvineSNP50K | 327 | 13.66–300 | 238 | 253.57 | 2.3 | 10.16 |
| Ma et al. (2015) | Oar_v3.1 | PennCNV | OvineSNP50K | 160 | – | 111 | 123.84 | 4.8 | 39 |
| Hou et al. (2015) | OaiAri1 | – | 4.1 M aCGH | 5 | 52–2000 | 51 | 304.86 | 0.6 | 0.62 |
| Zhu et al. (2016) | Oar_v3.1 | PennCNV | OvineSNP600K | 110 | – | 490 | 225 | 3.3 | 7.05 |
| Jenkins et al. (2016) | UMD3_OA | - | 2.1 M aCGH | 36 | 1–3600 | 3488 | 19 | 2.7 | 12.65 |
| Ma et al. (2017) | Oar_v3.1 | PennCNV | OvineSNP600K | 48 | 1–2300 | 1296 | 93 | 4.7 | 28.63 |
| Yan, et al. (2017) | Oar_v3.1 | SVS | OvineSNP50K | 385 | 15.3–6600 | 749 | 189 | 5.8 | 6.84 |
| PennCNV | 11.4–2108.8 | 464 | 305.5 | ||||||
| CnvPartion | 87–12,093.7 | 104 | 1521.3 | ||||||
| Di Gerlando et al. (2019) | Oar_v3.1 | SVS* | OvineSNP50K | 468 | 16.62–1817 | 365 | 324.27 | 4.8 | 5.4 |
*Golden Helix SNP and Variation Suite (SVS).