Table 4.
Number | Haplotypeb | Case frequency | Control frequency | OR (95% CI) | p value |
---|---|---|---|---|---|
1 | AGCCG | 0.5071 | 0.4753 | 1.0 | – |
2 | CCCGC | 0.2237 | 0.2210 | 0.96 (0.77–1.21) | 0.75 |
3 | ACTCG | 0.0754 | 0.0632 | 1.11 (0.77–1.61) | 0.58 |
4 | CCCCG | 0.0572 | 0.0560 | 0.96 (0.63–1.47) | 0.86 |
5 | ACCCG | 0.0432 | 0.0469 | 0.93 (0.59–1.44) | 0.73 |
6 | CCCCC | 0.0404 | 0.0333 | 1.11 (0.66–1.87) | 0.68 |
7 | AGCGC | 0.0160 | 0.0163 | 1.05 (0.47–2.34) | 0.90 |
8 | CGCCG | 0.0128 | 0.0103 | 1.17 (0.42–3.22) | 0.76 |
9 | ACCGC | 0.0003 | 0.0197 | 0.13 (0.03–0.59)c | 0.0079c |
10 | Rare | 0.0240 | 0.0580 | 0.36 (0.21–0.64)c | 0.0005c |
Adjusted by smoking duration, Global haplotype association p-value = 0.0011.
SNP order: rs12951053-rs1042522-rs8079544-rs12602273-rs8064946.
Boldface means association with decreased risk of lung cancer.