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. 2022 May 3;3(5):100623. doi: 10.1016/j.xcrm.2022.100623
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Mouse Anti-human Cytokeratin 7 Thermo Fisher Scientific 180234; RRID:AB_86727
Mouse Anti-human Cytokeratin 20 Agilent M7019; RRID:AB_2133718
Mouse Cytokeratin Pan antibody Cocktail (AE1AE3) Thermo Fisher Scientific MA5-13203, RRID:AB_10942225
Phospho-Akt (Ser473) (D9E) XP® Rabbit mAb Cell Signaling Technology Cat#4060, RRID: AB_231504
Akt Antibody Cell Signaling Technology Cat#9272, RRID:AB_329827
Phospho-S6 Ribosomal Protein (Ser235/236) Antibody Cell Signaling Technology Cat#2211, RRID:AB_331679
S6 Ribosomal Protein (5G10) Rabbit mAb Cell Signaling Technology Cat#2217, RRID:AB_331355
Anti-β-Actin Antibody (C4) Santa Cruz sc-47778, RRID:AB_2714189
Anti-Rabbit IgG (H+L), HRP Conjugate Promega W4011
Anti-Mouse IgG (H+L), HRP Conjugate Promega W4021

Biological samples

35 Brain Metastases collected from patients This study N/A
PDX samples This study N/A
PDCs This study N/A

Chemicals, peptides, and recombinant proteins

Buparlisib (NVP-BKM120) Selleckchem S2247
Everolimus (RAD001) Selleckchem S1120
B-27™ Supplement (50X), serum free Gibco™ 17504044
DMEM/F-12 Gibco™ 11320074
HEPES (1 M) Gibco™ 15630080
L-Glutamine (200 mM) Gibco™ A2916801
rhEGF Merck Life Science E9644
Human Recombinant bFGF StemCell Technologies 78003
N-2 Supplement (100X) Gibco™ 17502048
Kynurenic Acid Sigma-Aldrich K3375
Trypsin from porcine pancreas Sigma-Aldrich T4799
Deoxyribonuclease I from bovine pancreas Sigma-Aldrich DN25
Hyaluronidase from sheep testes Sigma-Aldrich H6254
Trypsin inhibitor from chicken egg white Sigma-Aldrich T9253
Matrigel® Matrix Corning® 354324
Poly(ethylene glycol) average Mn 300 Sigma-Aldrich 202371-500G
Dimethyl sulfoxide (DMSO) Sigma-Aldrich D2650
Laminin from Engelbreth-Holm-Swarm murine sarcoma basement membrane Sigma-Aldrich L-2020
Poly-L-ornithine solution Sigma-Aldrich P4957
Accutase® solution Sigma-Aldrich A6964
Trizma-Base Sigma-Aldrich 93362
Sodium Cloride (NaCl) Sigma-Aldrich S3014
Ethylenediaminetetraacetic acid (EDTA) Sigma-Aldrich E6758
Fetal Bovine Serum Biowest S181B-500
Euthasol: Sodium Pentobarbital 400mg/ml Dechra N/A
Isovet: Isoflurane 1000mg/g 250ml B. Braun Medical N/A
Bupaq: Buprenorphine 0,3mg/ml Plurivet N/A

Critical commercial assays

CellTiter 96® Aqueous One Solution Cell Proliferation Assay (MTS) Promega G3580
6.5 mm Transwell® with 8.0 μm Pore Polyester Membrane Insert Corning 3464
PhosSTOP™ Roche 4906845001
cOmplete™, Mini Protease Inhibitor Cocktail Roche 11836153001
Nitrocellulose Membrane 0.2 μm Bio-Rad 1620112
Bio-Rad Protein Assay Dye Reagent Concentrate Bio-Rad 5000006
Pierce™ ECL Western Blotting Substrate ThermoFisher Scientific 32106
EnVision+/HRP, Rabbit, HRP. Rabbit Agilent K4003

Deposited data

RNAseq of human brain metastases Sequence Read Archive (SRA) BioProject: PRJNA820633

Experimental models: Cell lines

MET-CF78 This Study N/A
MET-CF89 This Study N/A
MET-CF70 This Study N/A
MET-CF69 This Study N/A
MET-CF29 This Study N/A
MET-CF81 This Study N/A

Experimental models: Organisms/strains

NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ Charles River Laboratories RRID: IMSR_JAX:005557

Software and algorithms

FIJI Schindelin J, et al. 2012 https://fiji.sc/
GraphPad Prism version 8.0.0 for Windows GraphPad Software https://www.graphpad.com/
G∗Power 3.1 software Heinrich-Heine University of Dusseldorf http://www.gpower.hhu.de
RANDOM.ORG: True Random Number Service. Randomness and Integrity Services Ltd. https://www.random.org
STAR 2.7.4a Dobin et al, 2013 https://github.com/alexdobin/STAR
HTSeq (v.0.6.1p1) Anders et al, 2014 https://htseq.readthedocs.io/en/master/index.html
DESeq2 Love et al, 2014 https://bioconductor.org/packages/release/bioc/html/DESeq2.html

Other

Novosyn - Mid-term absorbable braided and coated suture made of polyglactin 910 Braun G0068213
Medical X-Ray Film Blue Agfa CP-BU New
Corning® Primaria™ 100 mm x 20 mm Standard Cell Culture Dish Corning 353803
Falcon™ Cell Strainers 70μm Fisher Scientific 352350
Epredia™ Lab Vision™ PT Module Fisher Scientific A80400012