Antibodies |
|
Mouse Anti-human Cytokeratin 7 |
Thermo Fisher Scientific |
180234; RRID:AB_86727
|
Mouse Anti-human Cytokeratin 20 |
Agilent |
M7019; RRID:AB_2133718
|
Mouse Cytokeratin Pan antibody Cocktail (AE1AE3) |
Thermo Fisher Scientific |
MA5-13203, RRID:AB_10942225
|
Phospho-Akt (Ser473) (D9E) XP® Rabbit mAb |
Cell Signaling Technology |
Cat#4060, RRID: AB_231504
|
Akt Antibody |
Cell Signaling Technology |
Cat#9272, RRID:AB_329827
|
Phospho-S6 Ribosomal Protein (Ser235/236) Antibody |
Cell Signaling Technology |
Cat#2211, RRID:AB_331679
|
S6 Ribosomal Protein (5G10) Rabbit mAb |
Cell Signaling Technology |
Cat#2217, RRID:AB_331355
|
Anti-β-Actin Antibody (C4) |
Santa Cruz |
sc-47778, RRID:AB_2714189
|
Anti-Rabbit IgG (H+L), HRP Conjugate |
Promega |
W4011 |
Anti-Mouse IgG (H+L), HRP Conjugate |
Promega |
W4021 |
|
Biological samples |
|
35 Brain Metastases collected from patients |
This study |
N/A |
PDX samples |
This study |
N/A |
PDCs |
This study |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
Buparlisib (NVP-BKM120) |
Selleckchem |
S2247 |
Everolimus (RAD001) |
Selleckchem |
S1120 |
B-27™ Supplement (50X), serum free |
Gibco™ |
17504044 |
DMEM/F-12 |
Gibco™ |
11320074 |
HEPES (1 M) |
Gibco™ |
15630080 |
L-Glutamine (200 mM) |
Gibco™ |
A2916801 |
rhEGF |
Merck Life Science |
E9644 |
Human Recombinant bFGF |
StemCell Technologies |
78003 |
N-2 Supplement (100X) |
Gibco™ |
17502048 |
Kynurenic Acid |
Sigma-Aldrich |
K3375 |
Trypsin from porcine pancreas |
Sigma-Aldrich |
T4799 |
Deoxyribonuclease I from bovine pancreas |
Sigma-Aldrich |
DN25 |
Hyaluronidase from sheep testes |
Sigma-Aldrich |
H6254 |
Trypsin inhibitor from chicken egg white |
Sigma-Aldrich |
T9253 |
Matrigel® Matrix |
Corning® |
354324 |
Poly(ethylene glycol) average Mn 300 |
Sigma-Aldrich |
202371-500G |
Dimethyl sulfoxide (DMSO) |
Sigma-Aldrich |
D2650 |
Laminin from Engelbreth-Holm-Swarm murine sarcoma basement membrane |
Sigma-Aldrich |
L-2020 |
Poly-L-ornithine solution |
Sigma-Aldrich |
P4957 |
Accutase® solution |
Sigma-Aldrich |
A6964 |
Trizma-Base |
Sigma-Aldrich |
93362 |
Sodium Cloride (NaCl) |
Sigma-Aldrich |
S3014 |
Ethylenediaminetetraacetic acid (EDTA) |
Sigma-Aldrich |
E6758 |
Fetal Bovine Serum |
Biowest |
S181B-500 |
Euthasol: Sodium Pentobarbital 400mg/ml |
Dechra |
N/A |
Isovet: Isoflurane 1000mg/g 250ml |
B. Braun Medical |
N/A |
Bupaq: Buprenorphine 0,3mg/ml |
Plurivet |
N/A |
|
Critical commercial assays |
|
CellTiter 96® Aqueous One Solution Cell Proliferation Assay (MTS) |
Promega |
G3580 |
6.5 mm Transwell® with 8.0 μm Pore Polyester Membrane Insert |
Corning |
3464 |
PhosSTOP™ |
Roche |
4906845001 |
cOmplete™, Mini Protease Inhibitor Cocktail |
Roche |
11836153001 |
Nitrocellulose Membrane 0.2 μm |
Bio-Rad |
1620112 |
Bio-Rad Protein Assay Dye Reagent Concentrate |
Bio-Rad |
5000006 |
Pierce™ ECL Western Blotting Substrate |
ThermoFisher Scientific |
32106 |
EnVision+/HRP, Rabbit, HRP. Rabbit |
Agilent |
K4003 |
|
Deposited data |
|
RNAseq of human brain metastases |
Sequence Read Archive (SRA) |
BioProject: PRJNA820633 |
|
Experimental models: Cell lines |
|
MET-CF78 |
This Study |
N/A |
MET-CF89 |
This Study |
N/A |
MET-CF70 |
This Study |
N/A |
MET-CF69 |
This Study |
N/A |
MET-CF29 |
This Study |
N/A |
MET-CF81 |
This Study |
N/A |
|
Experimental models: Organisms/strains |
|
NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ |
Charles River Laboratories |
RRID: IMSR_JAX:005557 |
|
Software and algorithms |
|
FIJI |
Schindelin J, et al. 2012 |
https://fiji.sc/ |
GraphPad Prism version 8.0.0 for Windows |
GraphPad Software |
https://www.graphpad.com/ |
G∗Power 3.1 software |
Heinrich-Heine University of Dusseldorf |
http://www.gpower.hhu.de |
RANDOM.ORG: True Random Number Service. |
Randomness and Integrity Services Ltd. |
https://www.random.org |
STAR 2.7.4a |
Dobin et al, 2013 |
https://github.com/alexdobin/STAR |
HTSeq (v.0.6.1p1) |
Anders et al, 2014 |
https://htseq.readthedocs.io/en/master/index.html |
DESeq2 |
Love et al, 2014 |
https://bioconductor.org/packages/release/bioc/html/DESeq2.html |
|
Other |
|
Novosyn - Mid-term absorbable braided and coated suture made of polyglactin 910 |
Braun |
G0068213 |
Medical X-Ray Film Blue |
Agfa |
CP-BU New |
Corning® Primaria™ 100 mm x 20 mm Standard Cell Culture Dish |
Corning |
353803 |
Falcon™ Cell Strainers 70μm |
Fisher Scientific |
352350 |
Epredia™ Lab Vision™ PT Module |
Fisher Scientific |
A80400012 |