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. 2022 Jul 1;283:108541. doi: 10.1016/j.fcr.2022.108541

Table 15.

Summary of key studies performed for assessing prospects for rice forming legume-like symbioses, and progress made in transfering nifa genes to non-diazotrophic hosts including plants.

Highlights References
Predisposition of rice for forming N2-fixing symbiosis with rhizobia
  • Some rice cultivars exude compounds in root exudates that induce transcription of the nodb genes of Rhizobium species

Reddy et al. (2000); Rolfe et al. (2000)
  • Bioengineering of rice plant to produce nod gene-inducing flavonoids in roots

Sreevidya et al. (2006)
  • Expression of the legume symbiosis-related lectin (PSL) and lectin nucleotide phosphohydrolase (GS52/GsLNP) genes in rice supported improved intercellular infection/colonization in roots

Sreevidya et al. (2005)
  • Evidence for the widespread occurrence of the homologs of early nodulin genes, and common symbiotic pathway genes of legumes in rice

Reddy et al., 1998a, Reddy et al., 1999; Kouchi et al. (1999);Goff et al. (2002); Yu et al. (2002); Gutjahr et al. (2008); Yano et al. (2008); Chen et al., 2007, Chen et al., 2008, Chen et al., 2009; Banba et al. (2008); Markmann and Parniske (2008)
  • Demonstration of ability of rice roots to perceive nod factors (NF)

Reddy et al., 1998b; Liang et al. (2013); Altúzar-Molina et al. (2020)
  • Expression of NF receptor proteins in rice confers root hairs the ability to respond to NFs in terms of exhibiting deformations

nifgene transfer to non-diazotrophic hosts including plants
  • Transfer of nif gene cluster from N2-fixing Klebsiella pneumoniaein to Escherichia coli

Dixon and Postgate (1972)
  • Transfer of iron-only (Anf) nitrogenase system composed of defined anf and nif genes from Azotobacter vinelandii into Escherichia coli

Yang et al. (2014)
  • Transfer of Pseudomonas stutzeri nitrogen fixation island enables expression of active nitrogenase in Escherichia coli

Han et al. (2015);Zhang et al. (2015b)
  • Expression of refactored Klebsiella oxytoca/ Klebsiella pneumonia nif gene cluster in Escherichi acoli

Temme et al. (2012);
Wang et al. (2013); Smanski et al. (2014); Li et al. (2016)
  • Transfer of a nif cluster from either Rhodobacter sphaeroides or Klebsiella oxytoca to generate free living N2-fixing Rhizobium sp IRBG74, and development of ammonium tolerant and oxygen tolerant N2-fixing Pseudomonas protegens Pf-5 by transferring nif cluster from Pseudomonas stutzeri and Azotobacter vinelandii

Ryu et al. (2020)
  • Engineering N2 fixation activity in Synechocystis 6803 by transferring nif gene cluster from Cyanothece ATCC 51142 or Leptolyngbya boryana dg5

Liu et al. (2018); Tsujimoto et al. (2018)
  • Transfer of the nif genes from Klebsiella pneumoniae to yeast

Zamir et al. (1981); Berman et al., 1985a, Berman et al., 1985b; Holland et al. (1987)
  • Generation of active Fe protein by targeting A. vinelandii NifH and NifM to mitochondrial matrix, and by expressing NifH, NifM, NifS and NifU in the cytosol of yeast

Lopez-Torrejon et al., 2016
  • Formation of nitrogenase NifDK tetramers in the mitochondria of

  • yeast by targeting Azotobacter vinelandii NifH, NifD, NifK, NifU, NifS, NifM, NifE, NifN, and NifB

Burén et al. (2017a)
  • Active Methanocaldococcus infernus NifB could be produced in yeast mitochondria when co-targetted with A. vinelandii NifU, NifS, and FdxN

Burén et al., 2017b, Burén et al., 2019
  • Production of FeMo (NifDK) tetramer and the active Fe protein in yeast by simultaneously transforming codon optimized nifH, nifD, nifK, nifB, nifE, nifN, nifV, nifX, hesA, groES, groEL of Pseudomonas polymyxa WLY78 and nifF, nifJ, nifS, nifU of Klebsiella oxytoca genes

Liu et al. (2019)
  • Biosynthesis of cofactor-activatable iron-only nitrogenase (AnfH) in mitochondrial matrix of yeast

López-Torrejón et al. (2021)
  • Identification of superior Hydrogenobacter thermophilus NifH protein variant to engineer N2 fixation in yeast and plants

Jiang et al. (2021)
  • Development of NifD variant for its stable maintenance in mitochondrial matrix of eukaryotic cells (yeast/tobacco)

Allen et al. (2020); Xiang et al. (2020)
  • Variations in solubilities of Nif proteins in tobacco mitochondrial environment have been identified (soluble components – NifF, M, N, S, U, W, X, Y and Z; insoluble components – NifB, E, H, J, K, Q and V). The limitations imposed by insolubility of some Nif proteins need to be overcome for successful assembly of nitrogenase in plant mitochondria

Okada et al. (2020)
  • Targeting and expressed NifH protein together with NifM into chloroplasts of tobacco could generate functional NifH, although with low activity

Ivleva et al. (2016)
  • Production of active nitrogenase Fe protein (NifH) by simultaneously targeting nuclear encoded Azotobacter vinelandii NifH, M, U and S components into chloroplasts of tobacco leaf cells

Eseverri et al. (2020)
  • Demonstration of the feasibility of targeting and transient expression of the complete range of 16 biosynthetic and catalytic nitrogenase (Nif) proteins in tobacco leaves

Allen et al. (2017)

*In the case of nif gene transfer, the studies were ordered according to bacteria, cyanobacteria, yeast and plants.

**All results concerned with nif gene expression in plants are obtained with transient expression studies excepting in the investigation conducted by Ivleva et al. (2016), where they were achieved with the plants harboring stably transformed chloroplasts.

anif = N2 fixation;

bnod= nodulation.