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. 2022 May 26;11:e74160. doi: 10.7554/eLife.74160

Appendix 2—table 1. The transition rates between all possible states of a crosslinker U(SA, SB)D.

(SA, SB) means either head A or B is bound but the other is unbound. All binding rates account for the linear binding density ϵ is the length of filament i with center-of-mass position xi and orientation pi inside the capture sphere with cutoff radius rc,s relative to position of motor/crosslinker x. The sum is over all possible candidate filaments i. The unbound-singly bound transition U(SA,SB) is determined by the association constant Ka and the force-independent off rate ko,s. Similarly, the singly bound-doubly bound transition (SA,SB)D is determined by the association constant Ke and force-independent off rate ko,d with an additional factor Vbind, the effective volume explored by the unattached head while the motor/crosslinker is singly bound. Energy dependence in the (SA,SB)D transition rates is imposed by the Boltzmann factor that is a function of β=1/(kBT), the tether length of the motor/crosslinker attached to filaments i and j at locations si and sj(si,sj,xi,pi,xj,pj), the characteristic length of the tether not under load o, and the filament diameter Dfil. The dimensionless factor λ determines the energy dependence in the unbinding rate while the xc is the characteristic length that determines the force dependence. The latter is not used in the simulations of the main text but is implemented in the code base.

Process Rate Value
U(SA,SB) Ron,S(x,t) 3ϵKako,S4πrc,S3iLin,i(x,t)
(SA,SB)U Roff,S ko,S
(SA,SB)D Ron,D(si,t) ϵKeko,DVbindjLjdsjexp[βκxl(1λ2(oDfil)2xc(oDfil))]
D(SA,SB) Roff,D(si,sj,t) ko,Dexp[βκxl(λ2(oDfil)2+xc(oDfil))]