Gene | Mutation | Designation | Region affected | Frequency (n, %) | Polyphen-2 | SIFT | ACMG | dbSNP | Methodology* | |
---|---|---|---|---|---|---|---|---|---|---|
LDLR | NM_000527.4: c.68-2 A>C | IVS2-2 A>C | Intron 01 | 2 (0.4%) | - | - | Likely Pathogenic | - | 1 | |
LDLR |
NM_000527.4: c.190 +4 A>T |
IVS2+4 A>T | Intron 02 | 2 (0.4%) | - | - | Pathogenic | rs769446356 | 2 | |
LDLR |
NM_000527.4: c.338 del [AGTTTC] ins T |
E113Fs | Exon 04 | 2 (0.4%) | - | - | Pathogenic | - | 1 | |
LDLR |
NM_000527.4: c.940 +1 G>R |
IVS6+1 G>A | Intron 06 | 2 (0.4%) | - | - | Pathogenic | rs879254729 | 1 | |
LDLR | NM_000527.4: c.1216 C>T | R406W | Exon 09 | 2 (0.4%) | Probably damaging (score: 1.000) | Tolerated (score= 1) | Pathogenic | - | 1 | |
LDLR | NM_000527.4: c.1291 G>A+ c.1867 A>G | A431T+I623V | Exon 09+13 | 2 (0.4%) |
Probably damaging (score: 1.000)+ Benign (score: 0.000) |
Damaging (score: 0.001) + Tolerated (score= 0.902) |
Pathogenic + Likely Pathogenic |
rs28942079 / rs555292896 | 1 | Novel |
LDLR | NM_000527.4: c.1420 C>Y | Q474X | Exon 10 | 2 (0.4%) | - | - | Pathogenic | rs201967266 | 1 | |
LDLR | NM_000527.4: c.1592 T>A | M531K | Exon 11 | 2 (0.4%) | Probably damaging (score: 1.000) | Damaging (score: 0) | Likely Pathogenic | *-- | 1 | |
LDLR | NM_000527.4: c.1609 G>T | G537X | Exon 11 | 2 (0.4%) | - | - | Pathogenic | rs879254958 | 1 | |
LDLR | NM_000527.4: c.1618 G>A | A540T | Exon 11 | 2 (0.4%) | Probably damaging (score: 1.000) | Damaging (score: 0.002) | Pathogenic | - | 1 | |
LDLR | NM_000527.4: c.1807 A>T | K603X | Exon 12 | 2 (0.4%) | - | - | Pathogenic | rs879255029 | 1 | |
APOB | NM_000384.2: c.10580 G>A | R3527Q | Exon 26 | 2 (0.4%) | Probably damaging (score: 1.000) | Damaging (score: 0.039) | Likely Pathogenic | rs5742904 | 2 | |
LDLR |
NM_000527.4: c.64 del [G] |
A22Fs | Exon 01 | 1 (0.2%) | - | - | Pathogenic | rs879254393 | 1 | |
LDLR |
NM_000527.4: c.101 G>C |
C34S | Exon 02 | 1 (0.2%) | Probably damaging (score: 1.000) | Damaging (score: 0) | Likely Pathogenic | rs879254406 | 1 | |
LDLR |
NM_000527.4: c.253 C>T |
Q85X | Exon 03 | 1 (0.2%) | - | - | Pathogenic | rs875989893 | 2 | |
LDLR |
NM_000527.4: c.310 T>C |
C104R | Exon 03 | 1 (0.2%) | Probably damaging (score: 1.000) | Damaging (score: 0) | Pathogenic | rs879254464 | 1 | |
LDLR |
NM_000527.4: c.313 +1 G>A |
IVS3+1 G>A | Intron 03 | 1 (0.2%) | - | - | Pathogenic | rs112029328 | 1 | |
LDLR |
NM_000527.4: c.344 G>A |
R115H | Exon 04 | 1 (0.2%) | Probably damaging (score: 1.000) | Tolerated (score= 0.069) | Likely Pathogenic | rs201102461 | 1 | |
LDLR |
NM_000527.4: c.536 A>C |
E179A | Exon 04 | 1 (0.2%) | Probably damaging (score: 1.000) | Damaging (score: 0) | Pathogenic | - | 1 | |
LDLR |
NM_000527.4: c.562 del[T] |
Y188Fs | Exon 04 | 1 (0.2%) | - | - | Pathogenic | - | 1 | |
LDLR |
NM_000527.4: c.590 G>A |
C197Y | Exon 04 | 1 (0.2%) | Probably damaging (score: 1.000) | Damaging (score: 0) | Pathogenic | rs376459828 | 1 | |
LDLR |
NM_000527.4: c.626 G>A |
C209Y | Exon 04 | 1 (0.2%) | Probably damaging (score: 1.000) | Damaging (score: 0) | Pathogenic | rs879254600 | 1 | |
LDLR |
NM_000527.4: c.664 T>C |
C222R | Exon 04 | 1 (0.2%) | Probably damaging (score: 1.000) | Damaging (score: 0) | Pathogenic | rs577934998 | 2 | |
LDLR |
NM_000527.4: c.681 C>A |
D227E | Exon 04 | 1 (0.2%) | Probably damaging (score: 1.000) | Damaging (score: 0.001) | Pathogenic | rs121908028 | 1 | |
LDLR |
NM_000527.4: c.682 G>T |
E228X | Exon 04 | 1 (0.2%) | - | - | Pathogenic | rs121908029 | 1 | |
LDLR |
NM_000527.4: c.799 G>T |
E267X | Exon 05 | 1 (0.2%) | - | - | Pathogenic | - | 1 | |
LDLR |
NM_000527.4: c.811 G>A |
V271I | Exon 05 | 1 (0.2%) | Benign (score: 0.000) | Tolerated (score= 0.253) | Likely Benign | rs749220643 | 2 |