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. 2021 May 16;29(5):639–653. doi: 10.5551/jat.62773
Gene Mutation Designation Region affected Frequency (n, %) Polyphen-2 SIFT ACMG dbSNP Methodology
LDLR NM_000527.4: c.68-2 A>C IVS2-2 A>C Intron 01 2 (0.4%) - - Likely Pathogenic - 1
LDLR

NM_000527.4: c.190

+4 A>T

IVS2+4 A>T Intron 02 2 (0.4%) - - Pathogenic rs769446356 2
LDLR

NM_000527.4: c.338

del [AGTTTC] ins T

E113Fs Exon 04 2 (0.4%) - - Pathogenic - 1
LDLR

NM_000527.4: c.940

+1 G>R

IVS6+1 G>A Intron 06 2 (0.4%) - - Pathogenic rs879254729 1
LDLR NM_000527.4: c.1216 C>T R406W Exon 09 2 (0.4%) Probably damaging (score: 1.000) Tolerated (score= 1) Pathogenic - 1
LDLR NM_000527.4: c.1291 G>A+ c.1867 A>G A431T+I623V Exon 09+13 2 (0.4%)

Probably damaging (score: 1.000)+

Benign (score: 0.000)

Damaging (score: 0.001)

+ Tolerated (score= 0.902)

Pathogenic +

Likely Pathogenic

rs28942079 / rs555292896 1 Novel
LDLR NM_000527.4: c.1420 C>Y Q474X Exon 10 2 (0.4%) - - Pathogenic rs201967266 1
LDLR NM_000527.4: c.1592 T>A M531K Exon 11 2 (0.4%) Probably damaging (score: 1.000) Damaging (score: 0) Likely Pathogenic -- 1
LDLR NM_000527.4: c.1609 G>T G537X Exon 11 2 (0.4%) - - Pathogenic rs879254958 1
LDLR NM_000527.4: c.1618 G>A A540T Exon 11 2 (0.4%) Probably damaging (score: 1.000) Damaging (score: 0.002) Pathogenic - 1
LDLR NM_000527.4: c.1807 A>T K603X Exon 12 2 (0.4%) - - Pathogenic rs879255029 1
APOB NM_000384.2: c.10580 G>A R3527Q Exon 26 2 (0.4%) Probably damaging (score: 1.000) Damaging (score: 0.039) Likely Pathogenic rs5742904 2
LDLR

NM_000527.4: c.64

del [G]

A22Fs Exon 01 1 (0.2%) - - Pathogenic rs879254393 1
LDLR

NM_000527.4: c.101

G>C

C34S Exon 02 1 (0.2%) Probably damaging (score: 1.000) Damaging (score: 0) Likely Pathogenic rs879254406 1
LDLR

NM_000527.4: c.253

C>T

Q85X Exon 03 1 (0.2%) - - Pathogenic rs875989893 2
LDLR

NM_000527.4: c.310

T>C

C104R Exon 03 1 (0.2%) Probably damaging (score: 1.000) Damaging (score: 0) Pathogenic rs879254464 1
LDLR

NM_000527.4: c.313

+1 G>A

IVS3+1 G>A Intron 03 1 (0.2%) - - Pathogenic rs112029328 1
LDLR

NM_000527.4: c.344

G>A

R115H Exon 04 1 (0.2%) Probably damaging (score: 1.000) Tolerated (score= 0.069) Likely Pathogenic rs201102461 1
LDLR

NM_000527.4: c.536

A>C

E179A Exon 04 1 (0.2%) Probably damaging (score: 1.000) Damaging (score: 0) Pathogenic - 1
LDLR

NM_000527.4: c.562

del[T]

Y188Fs Exon 04 1 (0.2%) - - Pathogenic - 1
LDLR

NM_000527.4: c.590

G>A

C197Y Exon 04 1 (0.2%) Probably damaging (score: 1.000) Damaging (score: 0) Pathogenic rs376459828 1
LDLR

NM_000527.4: c.626

G>A

C209Y Exon 04 1 (0.2%) Probably damaging (score: 1.000) Damaging (score: 0) Pathogenic rs879254600 1
LDLR

NM_000527.4: c.664

T>C

C222R Exon 04 1 (0.2%) Probably damaging (score: 1.000) Damaging (score: 0) Pathogenic rs577934998 2
LDLR

NM_000527.4: c.681

C>A

D227E Exon 04 1 (0.2%) Probably damaging (score: 1.000) Damaging (score: 0.001) Pathogenic rs121908028 1
LDLR

NM_000527.4: c.682

G>T

E228X Exon 04 1 (0.2%) - - Pathogenic rs121908029 1
LDLR

NM_000527.4: c.799

G>T

E267X Exon 05 1 (0.2%) - - Pathogenic - 1
LDLR

NM_000527.4: c.811

G>A

V271I Exon 05 1 (0.2%) Benign (score: 0.000) Tolerated (score= 0.253) Likely Benign rs749220643 2