Antibodies |
Rabbit polyclonal OGR1 |
Abcam |
ab72500,; RRID:AB_1523738 |
Rabbit polyclonal OGR1 |
LSBio |
LS-A1194; RRID:AB_591626 |
Rabbit polyclonal PLIN2/ADFP |
Abcam |
ab78920; RRID:AB_2040415 |
Rabbit monoclonal LC3B |
CST |
3868S; RRID:AB_2137707 |
Rabbit monoclonal phospho AKT S473 |
CST |
4060; RRID:AB_2315049 |
Rabbit polyclonal phospho AKT T308 |
CST |
9275; RRID:AB_329828 |
Rabbit polyclonal Total AKT |
CST |
9272; RRID:AB_329827 |
Rabbit monoclonal GAPDH |
Abcam |
Ab181602;RRID:AB_2630358 |
Mouse monoclonal Actin |
Sigma |
#A1978; RRID:AB_476692 |
Rabbit polyclonal PLIN2 |
LSBio |
B4850; RRID:AB_10801440 |
LAMP2/CD107b |
Novus |
NBP2-22217; RRID:AB_2722697 |
LAMP2a/Lysosome marker |
Abcam |
125,068; RRID:AB_10971511 |
Goat anti-Mouse IgG (H+L) Alexafluor 647 |
Molecular Probes |
A32728; RRID:AB_2633277 |
Goat anti Rabbit Alexafluor 594 |
Molecular Probes |
A11012; RRID:AB_2534079 |
Goat anti-Rabbit Alexafluor 647 |
Molecular Probes |
A21245; RRID:AB_2535813 |
Goat anti-Rabbit Alexafluor 680 |
Molecular Probes |
A27042; RRID:AB_2536103 |
Rabbit polyclonal phospho NFkB |
CST |
3033/93H1; RRID:AB_331284 |
Total NFkB |
CST |
D14E12; RRID:AB_2799570 |
Na/K+ATPase |
Abcam |
ab76020; RRID:AB_1310695 |
Rabbit monoclonal Fatty acid Synthase |
CST |
3180; RRID:AB_2100796 |
Rabbit monoclonal ACSS2/AceCS1 |
CST |
3658; RRID:AB_2222710 |
Rabbit polyclonal ACLY |
CST |
4332; RRID:AB_2223744 |
Rabbit monoclonal TFEB |
CST |
37785;RRID:AB_2799119 |
Rabbit monoclonal ACC |
CST |
3676; RRID:AB_2219397 |
Rabbit monoclonal PERK (D11A8) |
CST |
5683; RRID:AB_10841299 |
Rabbit polyclonal Phospho IRE1α (S724) |
Abcam |
ab124945; RRID:AB_11001365 |
Donkey Anti-Rabbit IgG Peroxidase conjugated |
Pierce |
PI-31458; RRID:AB_228213 |
Donkey Anti-Mouse IgG Peroxidase conjugated |
Pierce |
PI-31450; RRID:AB_2534691 |
Bacterial and virus strains |
lentiCRISPR V2 |
Addgene |
52961 |
Stbl3 competent E. coli cells |
Invitrogen |
C737303 |
DH5α Competent E. coli cells |
Invitrogen |
18258012 |
Biological samples |
Breast Tissue Micro Array |
Moffitt Cancer Center |
N/A |
Chemicals, peptides, and recombinant proteins |
TOFA |
Cayman Chemicals |
10005263 |
C75 |
Cayman Chemicals |
191282-48-1 |
Etomoxir |
Cayman Chemicals |
11969 |
GDC0941 |
Selleck Chemicals |
Catalog No. S1065 |
MK2206 |
Selleck Chemicals |
Catalog No. S1078 |
Chloroquine diphosphate |
Sigma |
C6628 |
Bafilomycin A1 |
Cayman Chemicals |
Item No.11038 |
PLC inhibitor U-73122 hydrate |
Sigma |
U6756 |
Edelfosine |
Tocris |
Cat.No.3022 |
Ogerin |
Sigma |
SML1482 |
DMEM, High Glucose |
Gibco |
11965-092 |
DMEM w/o L-glutamine, leucine, sodium pyruvate |
MP Biomedicals |
091642149 |
DMEM, no glucose |
Gibco |
11966-025 |
DMEM without Leucine |
CRYSTALGEN INC |
NC0565703 |
PIPES |
Sigma |
P1851 |
HEPES |
SIGMA |
H4034 |
Delipidated serum |
Gemini Bioproducts |
900-123 |
13C5 L-GLUTAMINE |
Cambridge Isotope |
1822-H-0.1 |
D-GLUCOSE (U-13C6, 99%) |
Cambridge Isotope |
CLM-1396-5 |
L-Leucine 3-13C |
Sigma |
604828 |
SODIUM ACETATE(2-13C) |
Cambridge Isotope Lab |
CLM-381-5 |
SODIUM L-LACTATE-13C3 SOLUTION |
Sigma |
485926 |
Fugene |
Promega |
PR-E2311 |
SYBR Green (Sso Advanced) |
Biorad |
172-5271 |
iScript cDNA synthesis Kit |
Biorad |
1708891 |
Power SYBR green |
ABI |
4368702 |
MTT |
Sigma |
M2128 |
Oligofectamin |
Invitrogen |
12252-011 |
Lipofectamine RNAiMAX |
Invitrogen |
13778075 |
Thiazolyl Blue MTT |
Sigma |
M2128-500MG |
Mounting medium with DAPI |
Vector Labs |
H-1200 |
Glass chamber slides |
LabTek |
12-565-8 |
Normal Goat Serum |
Fisher |
PI-31873 |
Tricine |
Sigma |
T0377 |
Lysotracker Deep Red |
Invitrogen |
L12492 |
Critical commercial assays |
QIAamp DNA Mini Kit |
Qiagen |
51304 |
RNeasy Plus Mini Kit |
Qiagen |
74134 |
LD Fluorescence Assay Kit |
Cayman Chemicals |
500001 |
iScript cDNA synthesis Kit |
Biorad |
1708891 |
SYBR Green (Sso Advanced) |
Biorad |
172-5271 |
Deposited data |
Lipidomics Data |
This paper, https://zenodo.org/record/6449175
|
Zenodo Data: https://doi.org/10.5281/zenodo.6449175
|
Experimental models: Cell lines |
Human: MCF7 |
ATCC/PSON |
N/A |
Human: T47D |
ATCC/PSON |
N/A |
Human: MDA-MB-231 |
Robert Gillies’s Lab, Moffitt Cancer Center |
N/A |
Experimental models: Organisms/strains |
Mouse: 6-8 weeks old Female NSG |
Jackson Labs |
N/A |
Oligonucleotides |
EGFP-gRNA-OligoF-5′ CACCG GGGCGAGGAGCTGTTCACCG |
This paper |
N/A |
EGFP-gRNA-OligoR -5′ AAAC CGGTGAACAGCTCCTCGCCCC |
This paper |
N/A |
OGR1-gRNA-OligoF1-5′ CACCG GGTGGTCTATGTTACCGTGC |
This paper |
N/A |
OGR1-gRNA-OligoR1-5′ AAACGC ACGGTAACATAGACCACCC |
This paper |
N/A |
OGR13′gRNA-OligoF-CACCGT CACGTGGAGCCACCCGCGG |
This paper |
N/A |
OGR13′gRNA-R-AAACCCG CGGGTGGCTCCACGTGAC |
This paper |
N/A |
TDAG8-gRNA-OligoF1-CACCGG TCAGCATTCCAGCCAATAT |
This paper |
N/A |
TDAG8-gRNA-OligoR1-AAAC ATATTGGCTGGAATGCTGACC |
This paper |
N/A |
TDAG8-3′ gRNA-OligoF-CACCGTCATTTAATAAAACGCAGGG |
This paper |
N/A |
TDAG83′gRNA-OligoR- AAAC CCCTGCGTTTTATTAAATGAC |
This paper |
N/A |
Recombinant DNA |
lentiCRISPR V2 |
Addgene |
52961 |
lentiCRISPR constructs with gRNA inserts listed above |
This paper |
N/A |
OGR1(Myc-DDK) tag |
Origene |
CAT#: RC229950 |
pCMV6-Entry |
Origene |
CAT#: PS100001 |
Software and algorithms |
Polly El-MAVEN |
El-MAVEN v0.8.0 |
N/A |
MSConvert |
He et al., 2015
|
https://proteowizard.sourceforge.io/download.html
|
LAS AF software version 1.6.0 build 1016 |
Leica Microsystems, Germany |
N/A |
Definiens Tissue Studio v4.7 suite |
Definiens Inc, Germany |
N/A |
Incucyte S3 |
Select Science |
N/A |
Other |
GPR68/OGR1siRNA |
Ambion |
Cat. #4427037 |
TDAG8/GPR65siRNA |
Ambion |
s16100 |
Silencer Negative Control siRNA |
Ambion |
AM4611 |