Table 5.

Prevalence of AMR genes found in non-typhoidal Salmonella spp. and Campylobacter jejuni.

AMR Gen	Study ID	Pathogen	HN	HI	Prevalance_H	AN	AI	Prevalnce_A_	RR	95%CI	Lab Technique
blaAMPc	Besharati et al., 2020 and Elhariri et al., 2020	NTS and S. H	99	13	13.13%	31	1	3.23%	0.34	[0.07; 1.72]	PCR
AAC(6’)-Ib	Youssef et al., 2021	NTS	50	8	16.00%	50	11	22.00%	1.38	[0.6; 3.13]	PCR
bla CMY-2	Elhariri et al., 2020	S. H	24	9	37.50%	9	1	11.11%	0.3	[0.04; 2.02]	PCR
bla CTXM-1	Youssef et al., 2021	NTS	50	8	16.00%	50	11	22.00%	1.38	[0.6; 3.13]	PCR
bla OXA	Elhariri et al., 2020	S. H	24	5	20.83%	9	1	11.11%	0.53	[0.07; 3.96]	PCR
											PCR
bla OXA-61	Divsalar et al., 2019	C. jejuni	80	42	52.50%	20	7	35.00%	0.67	[0.35; 1.25]	PCR
bla SHV	Youssef et al., 2021 and Elhariri et al., 2020	NTS and S. H	74	14	18.92%	59	12	20.34%	1.13	[0.49; 2.61]	PCR
blaTEM	Youssef et al., 2021, Besharati et al., 2020 and Elhariri et al., 2020	NTS, NTS, and S. H	149	19	12.75%	81	12	14.81%	0.91	[0.34; 2.44]	PCR
Class 1 Integrons	Besharati et al., 2020 and AbdEl-Aziz et al., 2020	NTS and C. jejuni	223	180	80.72%	42	29	69.05%	1.04	[1.01; 1.08]	PCR
class 2 Integrons	Besharati et al., 2020	NTS	75	22	29.33%	22	6	27.27%	0.93	[0.43; 2]	PCR
cme B	Divsalar et al., 2019	C. jejuni	80	41	51.25%	20	7	35.00%	0.68	[0.36; 1.29]	PCR
tet(A)	Divsalar et al., 2019	C. jejuni	80	17	21.25%	20	6	30.00%	1.41	[0.64; 3.11]	PCR
tet(O)	Divsalar et al., 2019 and Ghoneim et al., 2020	C. jejuni	84	71	84.52%	22	17	77.27%	0.92	[0.73; 1.16]	PCR

HN: Number of human isolates: HI: human isolates that have this gene; prevalance_H: prevalence among human isolates; AN: number of animal isolates; AI: animal isolates that have this gene; prevalance_A: prevalence among animal isolates; RR: relative risk; NTS: non-typhoidal Salmonella; S.H: Salmonella Heidelberg; C. jejuni: Campylobacter jejuni.