Table 3.
The fold change ratio of genes in several key vascular development and transcriptional regulation pathways.
| Process | Speculative Function | Unigene ID | F1vS1 | F1vS2 | F2vS1 | F2vS2 |
|---|---|---|---|---|---|---|
| plant-type secondary cell wall biogenesis | cellulose synthase | Cluster-14363.16654 | 2.781 | 2.704 | 1.643 | 1.570 |
| Cluster-14363.17155 | 3.181 | 2.834 | 2.070 | 1.726 | ||
| Cluster-14363.24938 | 5.799 | 2.547 | 6.081 | 2.832 | ||
| Exostosin | Cluster-14363.20748 | 2.841 | 2.757 | 1.268 | 1.185 | |
| fasciclin-like arabinogalactan protein | Cluster-14363.18562 | 2.603 | 3.123 | 1.765 | 2.289 | |
| Cluster-14363.14849 | 2.962 | 3.642 | 1.753 | 2.433 | ||
| Cluster-14363.25117 | 2.656 | 2.678 | 1.524 | 1.547 | ||
| Cluster-14363.6739 | 4.230 | 4.432 | 2.344 | 2.552 | ||
| glucuronoxylan 4-O-methyltransferase | Cluster-14363.13842 | 3.744 | 3.140 | 2.008 | 1.404 | |
| glucuronyltransferase | Cluster-14363.14914 | 2.455 | 2.865 | 1.309 | 1.720 | |
| glycosyl transferase | Cluster-14363.8812 | 3.382 | 3.340 | 1.658 | 1.617 | |
| laccase | Cluster-14363.9138 | 3.477 | 3.514 | 1.736 | 1.774 | |
| MYB transcription factor | Cluster-14363.13132 | 3.301 | 2.909 | 1.843 | 1.452 | |
| Cluster-17858.0 | 2.152 | 2.620 | 1.069 | 1.538 | ||
| NAC transcription factor | Cluster-15866.0 | 2.925 | 2.997 | 1.766 | 1.845 | |
| phytochelatin synthetase | Cluster-14363.17226 | 3.718 | 3.903 | 3.050 | 3.245 | |
| xylan synthesis | Cluster-14363.14397 | 2.455 | 2.537 | 1.274 | 1.359 | |
| lignin biosynthetic process | chitinase | Cluster-14363.19471 | 3.163 | 2.963 | 1.626 | 1.427 |
| interfascicular fibers synthesis | Cluster-14363.13437 | 2.402 | 3.274 | 2.872 | 3.745 | |
| laccase | Cluster-14363.7596 | 4.162 | 3.920 | 2.297 | 2.055 | |
| O-methyltransferase | Cluster-14363.16741 | 3.258 | 2.758 | 2.537 | 2.039 | |
| xylan biosynthetic process | galacturonosyltransferase | Cluster-14363.6326 | 2.609 | 2.866 | 1.306 | 1.566 |
| synthesis and deposition of secondary wall cellulose | Cluster-14363.15500 | 3.517 | 3.539 | 2.184 | 2.206 | |
| unidimensional cell growth | actin monomer-binding protein | Cluster-14363.20463 | 1.884 | 2.078 | 1.727 | 1.920 |
| Alpha-Expansin | Cluster-14363.17330 | 4.839 | 2.400 | 4.704 | 2.264 | |
| cell differentiation | Cluster-14363.13311 | 2.983 | 2.661 | 1.934 | 1.618 | |
| expansin A6 | Cluster-14363.28593 | 1.493 | 1.715 | 1.113 | 1.336 | |
| Immunoglobulin E-set | Cluster-14363.18373 | 4.244 | 2.924 | 2.466 | 1.144 | |
| key turgor pressure regulator in plant cells | Cluster-14363.35635 | 1.745 | 1.599 | 1.174 | 1.027 | |
| plasma-membrane associated cation-binding protein | Cluster-14363.13070 | 2.431 | 2.956 | 1.436 | 1.961 | |
| water transport | ABC transporter | Cluster-14363.32034 | 1.416 | 2.427 | 1.937 | 2.949 |
| plasma membrane intrinsic protein | Cluster-14363.15480 | 1.787 | 1.351 | 1.987 | 1.553 | |
| Cluster-14363.16016 | 2.476 | 2.960 | 2.677 | 3.161 | ||
| Cluster-14363.19969 | 2.378 | 2.143 | 2.477 | 2.242 | ||
| Cluster-14363.20258 | 1.136 | 1.286 | 1.258 | 1.410 | ||
| water and urea channels | Cluster-14363.8769 | 4.830 | 3.982 | 4.473 | 3.620 | |
| regulation of transcription, DNA-templated | Auxin inducible protein | Cluster-13847.0 | 1.559 | 1.218 | 1.797 | 1.455 |
| Auxin-responsive gene | Cluster-14363.35167 | 1.811 | 1.168 | 2.146 | 1.509 | |
| B-box type zinc finger protein | Cluster-14363.31847 | 3.759 | 2.030 | 3.805 | 2.075 | |
| bHLH DNA-binding protein | Cluster-14363.10371 | 3.195 | 2.068 | 3.374 | 2.250 | |
| Cluster-14363.388 | 1.248 | 2.707 | 1.614 | 3.076 | ||
| C2H2 transcription factor | Cluster-14363.17522 | 2.245 | 1.967 | 1.666 | 1.391 | |
| Cluster-14363.19420 | 2.797 | 3.476 | 2.111 | 2.800 | ||
| Cluster-14363.25933 | 1.883 | 1.732 | 1.247 | 1.098 | ||
| Dof transcription factor | Cluster-14363.5357 | 1.185 | 1.278 | 1.471 | 1.570 | |
| multiprotein bridging factor | Cluster-14363.21135 | 1.831 | 2.109 | 2.962 | 3.240 | |
| MYB transcription factor | Cluster-14363.31703 | 5.646 | 3.215 | 5.811 | 3.389 | |
| Cluster-14363.50 | 2.631 | 2.067 | 2.778 | 2.216 | ||
| Cluster-16574.0 | 5.926 | 3.140 | 6.629 | 3.849 | ||
| Cluster-17031.0 | 1.934 | 1.959 | 1.801 | 1.827 | ||
| Cluster-17693.0 | 5.932 | 5.833 | 5.440 | 5.353 | ||
| zinc knuckle protein | Cluster-14363.23170 | 1.345 | 1.180 | 1.644 | 1.483 | |
| response to auxin | Auxin efflux carrier protein | Cluster-14363.23375 | 2.303 | 1.763 | 2.336 | 1.793 |
| Cluster-14363.23376 | 1.570 | 1.270 | 1.796 | 1.501 | ||
| modulator of auxin signaling | Cluster-14363.24574 | 1.570 | 2.781 | 1.064 | 2.279 | |
| regulates vesicle trafficking | Cluster-14363.13767 | 1.350 | 1.129 | 2.224 | 2.006 | |
| regulator of cellular auxin efflux | Cluster-14363.4717 | 2.327 | 1.505 | 2.275 | 1.457 | |
| response to jasmonic acid | controls the balance between salicylic acid and jasmonic acid signaling | Cluster-14363.16305 | 2.509 | 2.540 | 1.252 | 1.294 |
| NAC transcription factor | Cluster-18724.0 | 2.013 | 1.488 | 2.351 | 1.834 | |
| required for wound-induced jasmonic acid accumulation | Cluster-14363.17181 | 2.753 | 2.264 | 2.969 | 2.478 | |
| response to abscisisc acid and jasmonic acid | Cluster-16707.0 | 7.905 | 7.813 | 4.921 | 4.835 | |
| vacuole formation | Cluster-14363.19730 | 3.595 | 3.708 | 2.602 | 2.710 | |
| wound- and methyl jasmonate-induced secondary metabolism | Cluster-14363.28007 | 2.998 | 1.359 | 2.978 | 1.338 |