Bacterial and virus strains |
|
AAV-hSyn1-FLEx-axon-GCaMP6s |
Broussard et al., 2018 |
Addgene: 112010-AAV5 |
|
Deposited data |
|
Example imaging dataset for motion and distortion correction |
This paper |
https://doi.org/10.6084/m9.figshare.19212501.v1 |
Example imaging dataset for across-session registration |
This paper |
https://doi.org/10.6084/m9.figshare.19217421.v1 |
|
Experimental models: Organisms/strains |
|
Mouse: CaMKIIa-tTA: B6;CBA-Tg(Camk2a-tTA)1Mmay/J |
The Jackson Laboratory |
RRID:IMSR_JAX:003010 |
Mouse: tetO-GCaMP6s: B6;DBA-Tg(tetO-GCaMP6s)2Niell/J |
The Jackson Laboratory |
RRID:IMSR_JAX:024742 |
Mouse: B6;129S6-Chattm2(cre)Lowl/J |
The Jackson Laboratory |
RRID:IMSR_JAX:006410 |
|
Software and algorithms |
|
PatchWarp |
This paper |
https://doi.org/10.5281/zenodo.5232757, https://github.com/ryhattori/PatchWarp
|
MATLAB |
MathWorks |
RRID:SCR_001622
|
Python3 |
Python Software Foundation |
RRID:SCR_008394
|
ScanImage |
Vidrio Technologies, LLC |
RRID:SCR_014307
|
suite2p |
Pachitariu et al., 2017, bioRxiv |
https://github.com/MouseLand/suite2p |
CaImAn |
Giovannucci et al., 2019, eLife |
RRID:SCR_021533https://github.com/flatironinstitute/CaImAn
|
Matplotlib |
Hunter, Computing in Science and Engineering, 2010, pp. 90-95, vol. 9 |
https://github.com/matplotlib/matplotlib |
Seaborn |
Waskom, 2021, Open Source Software, 6, 3021 |
https://github.com/mwaskom/seaborn |