Skip to main content
. 2022 Apr 27;2(5):100205. doi: 10.1016/j.crmeth.2022.100205
REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains

AAV-hSyn1-FLEx-axon-GCaMP6s Broussard et al., 2018 Addgene: 112010-AAV5

Deposited data

Example imaging dataset for motion and distortion correction This paper https://doi.org/10.6084/m9.figshare.19212501.v1
Example imaging dataset for across-session registration This paper https://doi.org/10.6084/m9.figshare.19217421.v1

Experimental models: Organisms/strains

Mouse: CaMKIIa-tTA: B6;CBA-Tg(Camk2a-tTA)1Mmay/J The Jackson Laboratory RRID:IMSR_JAX:003010
Mouse: tetO-GCaMP6s: B6;DBA-Tg(tetO-GCaMP6s)2Niell/J The Jackson Laboratory RRID:IMSR_JAX:024742
Mouse: B6;129S6-Chattm2(cre)Lowl/J The Jackson Laboratory RRID:IMSR_JAX:006410

Software and algorithms

PatchWarp This paper https://doi.org/10.5281/zenodo.5232757, https://github.com/ryhattori/PatchWarp
MATLAB MathWorks RRID:SCR_001622
Python3 Python Software Foundation RRID:SCR_008394
ScanImage Vidrio Technologies, LLC RRID:SCR_014307
suite2p Pachitariu et al., 2017, bioRxiv https://github.com/MouseLand/suite2p
CaImAn Giovannucci et al., 2019, eLife RRID:SCR_021533https://github.com/flatironinstitute/CaImAn
Matplotlib Hunter, Computing in Science and Engineering, 2010, pp. 90-95, vol. 9 https://github.com/matplotlib/matplotlib
Seaborn Waskom, 2021, Open Source Software, 6, 3021 https://github.com/mwaskom/seaborn