Table 2.
Gene families under positive selection (Ka/Ks ratio > 1) in Montipora
| Gene family group | Gene family ID | Expressed in early life stages of | Swiss-Prot annotation (BLASTP, e-value cutoff: 1e−5) | Pfam domain (InterProScan, e-value cutoff: 1e−3) | Subcellular localization | Ka | Ks | Ka/Ks ratio |
|---|---|---|---|---|---|---|---|---|
| Common to the three genera | HOG0011297 | Montipora and Acropora | G patch domain and ankyrin repeat-containing protein 1 |
Ankyrin repeats (3 copies) (PF12796) G-patch domain (PF01585) |
Nucleus | 1.02946 | 0.868207 | 1.18573 |
| HOG0013033 | Montipora and Acropora | NA | NA | Nucleus | 0.047466 | 0.016942 | 2.80166 | |
| HOG0013161 | Montipora and Acropora | NA | NA | Extracellular | 0.067747 | 0.011507 | 5.88723 | |
| HOG0013504 | Montipora and Acropora | NA | NA | Extracellular | 0.250122 | 0.146258 | 1.71014 | |
| HOG0016452 | Montipora and Acropora | Nucleoredoxin-like protein 2 | Thioredoxin-like (PF13905) | Cytoplasm | 1.04061 | 0.866303 | 1.2012 | |
| Common to Montipora and Acropora | HOG0000399 | - | NA | NA | Mitochondrion | 1.04494 | 0.829832 | 1.25922 |
| HOG0007354 | Montipora and Acropora | NA | NA | Cytoplasm | 0.043171 | 0.01538 | 2.80698 | |
| HOG0008211 | Montipora and Acropora | E3 ubiquitin-protein ligase TRIM71 |
RING-type zinc-finger (PF13445) B-box zinc finger (PF00643) |
Nucleus | 1.02988 | 0.901833 | 1.14199 | |
| HOG0008701 | Montipora and Acropora | Collagen alpha-1(V) chain | Fibrillar collagen C-terminal domain (PF01410) | Extracellular | 0.086894 | 0.031594 | 2.75035 | |
| HOG0018764 | Montipora and Acropora | Histamine H2 receptor | 7 transmembrane receptor (rhodopsin family) (PF00001) | Cell membrane | 1.03386 | 0.896216 | 1.15358 | |
| Restricted to Montipora | HOG0000410 | Montiporaa | NA | NA | Cytoplasm | 1.0489 | 0.858182 | 1.22224 |
| HOG0006069 | Montiporaa | NA | NA | Cytoplasm | 1.06207 | 0.789879 | 1.34459 | |
| HOG0025744 | Montiporaa | NA | NA | Cytoplasm | 1.04814 | 0.846526 | 1.23816 | |
| HOG0025248 | Montiporaa | NA | NA | Golgi apparatus | 1.06112 | 0.837214 | 1.26744 | |
| HOG0025123 | Montiporaa | NA | NA | Mitochondrion | 1.03568 | 0.871894 | 1.18785 | |
| HOG0025167 | Montiporaa | NA | NA | Mitochondrion | 1.05341 | 0.81252 | 1.29647 | |
| HOG0025503 | Montiporaa | NA | NA | Mitochondrion | 1.06094 | 0.794999 | 1.33451 | |
| HOG0025176 | Montiporaa | NA | NA | Plastid | 1.07662 | 0.736763 | 1.46128 | |
| HOG0025663 | Montiporaa | NA | NA | Lysosome/Vacuole | 1.0435 | 0.883964 | 1.18048 | |
| HOG0023383 | Montiporab | NA | NA | Cytoplasm | 1.0506 | 0.86614 | 1.21297 | |
| HOG0024846 | Montiporab | NA | NA | Cytoplasm | 0.157342 | 0.054572 | 2.8832 | |
| HOG0025044 | Montiporab | NA | NA | Cytoplasm | 1.04722 | 0.8635 | 1.21276 | |
| HOG0025199 | Montiporab | NA | NA | Cytoplasm | 1.04978 | 0.833375 | 1.25967 | |
| HOG0024900 | Montiporab | NA | NA | Endoplasmic reticulum | 0.072466 | 0.030348 | 2.38782 | |
| HOG0025608 | Montiporab | NA | NA | Endoplasmic reticulum | 1.05623 | 0.836453 | 1.26275 | |
| HOG0024879 | Montiporab | NA | NA | Extracellular | 1.04481 | 0.820572 | 1.27328 | |
| HOG0024911 | Montiporab | NA | NA | Extracellular | 1.08591 | 0.764205 | 1.42097 | |
| HOG0024765 | Montiporab | NA | NA | Mitochondrion | 1.06916 | 0.745005 | 1.43511 | |
| HOG0025496 | Montiporab | NA | NA | Mitochondrion | 1.03657 | 0.886546 | 1.16922 | |
| HOG0025423 | Montiporab | NA | NA | Mitochondrion | 1.05678 | 0.799324 | 1.32209 | |
| HOG0025535 | Montiporab | Integrase/recombinase xerD homolog | NA | Mitochondrion | 1.04223 | 0.880029 | 1.18431 | |
| HOG0025606 | Montiporab | NA | NA | Mitochondrion | 1.05418 | 0.833955 | 1.26408 | |
| HOG0024806 | Montiporab | NA | Zinc knuckle (PF00098) | Nucleus | 1.0438 | 0.876216 | 1.19126 | |
| HOG0024834 | Montiporab | NA | NA | Nucleus | 1.04457 | 0.853951 | 1.22323 | |
| HOG0024972 | Montiporab | NA | NA | Nucleus | 1.06879 | 0.737384 | 1.44943 | |
| HOG0025048 | Montiporab | NA | NA | Nucleus | 1.0465 | 0.828206 | 1.26357 | |
| HOG0025616 | Montiporab | NA | NA | Nucleus | 1.07293 | 0.838674 | 1.27932 | |
| HOG0024996 | - | NA | NA | Cell membrane | 0.827813 | 0.407974 | 2.02908 | |
| HOG0024975 | - | NA | NA | Endoplasmic reticulum | 1.02887 | 0.884795 | 1.16284 | |
| HOG0025445 | - | TNF receptor-associated factor 6 | TRAF-type zinc finger (PF02176) | Nucleus | 0.094242 | 0.019425 | 4.85163 |
aExpressed at least one early life stages
bExpressed at all three early life stages