Table 4.
Single nucleotide polymorphisms regions identified in the ΔstkR mutant compared to the WT strain.
| SNP Position a | Codon in WT | Codon in ΔstkR | Amino Acid in WT | Amino Acid in ΔstkR | Annotation of Region b |
|---|---|---|---|---|---|
| 176528 | - | - | - | - | Non-coding region |
| 538323 | GAG | GGG | Glu | Gly | Hypothetical protein (Repeat region) |
| 1001055 | - | - | - | - | Non-coding region |
| 1058011 | - | - | - | - | Non-coding region |
| 1098529 | - | - | - | - | Non-coding region |
| 1150782 | TAA | CAA | Stop | Gln | Aldehyde dehydrogenase |
| 1590889 | GCT | GCC | Ala | Ala | Hypothetical protein |
| 2730447 | TTT | TTC | Phe | Phe | Hypothetical protein |
| 2796261 | - | - | - | - | Non-coding region |
| 3132365 | TTC | TCC | Phe | Ser | Phenazine biosynthesis protein (PhzF) |
| 3201037 | CCC | TCC | Pro | Ser | Repeat region |
| 3361708 | - | - | - | - | Non-coding region |
| 3370031 | - | - | - | - | Non-coding region |
| 3445432 | AAA | GAA | Lys | Glu | Alcyl-CoA Dehydrogenase |
a SNP positions identified with SAMtools v1.9 and VCFools v0.11.17. b Annotation of region undertaken using Prokka.