Table 2.
Protein | PDB ID | Ligand | Binding Energy (Kcal/mol) |
Inhibition Constant (Ki) | Interacting Residues |
---|---|---|---|---|---|
L-selectin | 5VC1 | Fucoidan | −5.82 | 54.41 µM | Lys84(1.9Å), Glu88(1.9Å), Tyr94(2.6Å), Asn105 (2.0Å), Lys111(2.0Å), |
Alginate | −4.3 | 704.72 µM | Lys55(2.2 Å), Trp60(2.6Å), Glu88(1.9 Å), | ||
E-selectin | 1G1T | Fucoidan | −5.69 | 67.62 µM | Lys55(2.0Å), Asn58(2.1Å), Asn83(2.7Å), Arg84(2.6Å), Asp106(2.1Å) |
Alginate | −4.09 | 997.16 µM | Asn58(1.9 Å), Trp60(2.0 Å), Lys74(1.9Å), Trp76(1.8 Å) | ||
MCP-1 | 1DOK | Fucoidan | −5.67 | 69.96 µM | Cys11(1.8 Å), Tyr13(2.1 Å), Asn14(2.0Å), Cys52(1.9 Å) |
Alginate | −3.84 | 1.52 mM | Asn14(2.0 Å), Glu50(2.1Å), Cys52(1.7Å) | ||
ICAM-1 | 1IAM | Fucoidan | −5.66 | 70.39 µM | Leu33(1.7Å), Lys39(2.4Å), Glu41(1.8Å), Lys50(1.8Å), Tyr52(1.9Å), Tyr66(2.1Å) |
Alginate | −4.98 | 224.33 µM | Leu33(1.9Å), Lys39(1.9Å), Glu41(2.3 Å), Lys50(2.5Å), Tyr52(2.1Å), Tyr66(2.2Å) |