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. 2022 May 17;27(10):3197. doi: 10.3390/molecules27103197

Table 2.

AutoDock docking results of marine bioactive compounds (fucoidan and alginate) with inflammatory proteins.

Protein PDB ID Ligand Binding Energy
(Kcal/mol)
Inhibition Constant (Ki) Interacting Residues
L-selectin 5VC1 Fucoidan −5.82 54.41 µM Lys84(1.9Å), Glu88(1.9Å), Tyr94(2.6Å), Asn105 (2.0Å), Lys111(2.0Å),
Alginate −4.3 704.72 µM Lys55(2.2 Å), Trp60(2.6Å), Glu88(1.9 Å),
E-selectin 1G1T Fucoidan −5.69 67.62 µM Lys55(2.0Å), Asn58(2.1Å), Asn83(2.7Å), Arg84(2.6Å), Asp106(2.1Å)
Alginate −4.09 997.16 µM Asn58(1.9 Å), Trp60(2.0 Å), Lys74(1.9Å), Trp76(1.8 Å)
MCP-1 1DOK Fucoidan −5.67 69.96 µM Cys11(1.8 Å), Tyr13(2.1 Å), Asn14(2.0Å), Cys52(1.9 Å)
Alginate −3.84 1.52 mM Asn14(2.0 Å), Glu50(2.1Å), Cys52(1.7Å)
ICAM-1 1IAM Fucoidan −5.66 70.39 µM Leu33(1.7Å), Lys39(2.4Å), Glu41(1.8Å), Lys50(1.8Å), Tyr52(1.9Å), Tyr66(2.1Å)
Alginate −4.98 224.33 µM Leu33(1.9Å), Lys39(1.9Å), Glu41(2.3 Å), Lys50(2.5Å), Tyr52(2.1Å), Tyr66(2.2Å)