AMBER	Assisted Model Building with Energy Refinement tool
BPGA	Bacterial pan-genome analysis tool
CAI	Codon adaptation index
CD-HIT	Cluster database at high identity with tolerance
C-Immsimm	Computational immune simulation
CTL	Cytotoxic T lymphocytes
GRAVY	Grand average of hydropathicity
H.B	Hydrogen bonding
HTL	Helper T lymphocytes
IEDB	Immune epitope database resource
IFNg	Interferon gamma
IRMSD	Interface root-mean-square deviation
JCAT	Java codon adaptation tool
MD	Molecular dynamics
MEPTWV	Multi-epitope peptide T. whipplei vaccine
MMGBSA	Molecular mechanics generalized born surface area
MMPBSA	Molecular mechanics Poisson–Boltzmann surface area
MW	Molecular weight
NCBI	National center of biotechnology information
PCR	Polymerase chain reaction
PDBsum	Protein databank structural summaries
PSORTB	Protein subcellular localization prediction tool
RMSD	Root-mean-square deviation
RMSF	Root-mean-square fluctuations
TLR4	Toll-like receptor 4
TMHMM	Transmembrane Helices; Hidden Markov Model