Table 4.
List of 12 paired-culture positive cases.
| Culture result | mNGS result | |||||||
|---|---|---|---|---|---|---|---|---|
| Sample ID | Type | Culture result | CovRate | Depth | Re_Abu | Genus_Re_Abu | SMRN | SMRNG |
| 21 | BALF | Pseudomonas aeruginosa | 0.2029 | 1 | 2.59 | 37.36 | 232 | 1855 |
| 26 | Tissue | Mycobacterium tuberculosis | 0 | 0 | 0 | 0 | 0 | 0 |
| 35 | BALF | M. tuberculosis | 0 | 0 | 0 | 0 | 0 | 0 |
| 38 | Sputum | Staphylococcus aureus | 0.0017 | 1 | 0.01 | 0.07 | 1 | 1 |
| 118 | BALF | P. aeruginosa | 0.0081 | 1 | 0.46 | 0.9 | 10 | 14 |
| 120 | Drainage fluid | P. aeruginosa | 0 | 0 | 0 | 0 | 0 | 0 |
| 153 | Pleural fluid | Staphylococcus hominis | 0.0044 | 1 | 0.58 | 1.6 | 1 | 3 |
| 178 | Tissue | Actinomyces | 0.0016 | 1 | 0.31 | 2 | ||
| 186 | Ascitic fluid | M. tuberculosis | 0 | 0 | 0 | 0 | 0 | 0 |
| 203 | Pleural fluid | Staphylococcus epidermidis | 0.0019 | 1 | 1.51 | 6.44 | 1 | 1 |
| 248 | Blood | Cryptococcus humicolus | 0 | 0 | 0 | 0 | 0 | 0 |
| 266 | Tissue | Corynebacterium afermentans | 0 | 0 | 0 | 0 | 0 | 0 |
mNGS, metagenomics next-generation sequencing; BALF, bronchoalveolar lavage fluid; CovRate, coverage rate; Re_Abu, relative abundance; SMRN, stringent mapped reads number at species level; SMRNG, stringent mapped reads number at genus level.