TABLE 2.
Strains examined in this study
| Taxon | Strain | Identity | Sequence accession no. |
|---|---|---|---|
| Lactobacillus acidophilus | ASF 360 | Lactobacillus sp. | AF157050 |
| Lactobacillus salivarius | ASF 361 | L. murinus-L. animalis | AF157049 |
| Bacteroides distasonis | ASF 519 | [Bacteroides] sp. | AF157056 |
| Spiral-shaped organism | ASF 457 | Flexistipes phylum | AF157055 |
| Fusiform EOS bacteria | ASF 356 | Clostridium sp. | AF157052 |
| Fusiform EOS bacteria | ASF 492 | E. plexicaudatum | AF157054 |
| Fusiform EOS bacteria | ASF 502 | Clostridium sp. | AF157053 |
| Fusiform EOS bacteria | ASF 500 | Clostridium sp. | AF157051 |
| [Bacteroides] forsythus | ATCC 43037T | L16495 | |
| [Bacteroides] merdae | ATCC 43184T | X83954 | |
| [Bacteroides] distasonis | ATCC 8503T | M86695 | |
| Acetitomaculum ruminis | ATCC 43876T | M59083 | |
| Catonella morbi | ATCC 51271T | X87151 | |
| CDC group DF-3 | CDC F19047 | U41355 | |
| Clostridium neopropionicum | DSM 3847T | X76746 | |
| Clostridium piliforme | Uncultivable | L07416 | |
| Clostridium propionicum | ATCC 25522T | X77841 | |
| Deferribacter thermophilus | MBA1 | U756092 | |
| Eubacterium contortum | ATCC 25540T | L34615 | |
| Eubacterium plexicaudatuma | ATCC 27514T | AF157058 | |
| Flexistipes sinusarabic | DSM 4947 | M59231 | |
| Flexistipes phylum Colobus | Lincoln Park 3 | AF157057 | |
| Flexistipes phylum Rodent-1 | HRI3liv | AF059188 | |
| Flexistipes phylum Rodent-2 | UNSWRSp12 | AF059190 | |
| Flexistipes phylum Rodent-3 | UNSWMCS1 | AF059189 | |
| Geovibrio ferrireducens | PAL-1 | X95744 | |
| Johnsonella ignava | ATCC 51276T | X87152 | |
| Lactobacillus acidophlus | ATCC 1968T (= ATCC 4356T) | M58802 | |
| Lactobacillus animalis | ATCC 35046T | M58807 | |
| Lactobacillus delbrueckii subsp. lactis | ATCC 12315T | M58823 | |
| Lactobacillus mali | ATCC 27053T | M58824 | |
| Lactobacillus murinus | ATCC 35020T | M58826 | |
| Lactobacillus salivarius | ATCC 11741T | AF089108 | |
| Roseburia cecicola | ATCC 33874T | L14676 | |
| Ruminococcus gnavus | ATCC 29149T | X94967 |
a
E. plexicaudatum type strain ATCC 27514 is not available because it was found to be nonviable.