TABLE 1.
Some characteristics of AAOB (nitrifying bacteria), methanotrophic bacteria, and unknown high-affinity methane oxidizers in soila
| Bacteria | Phylogenetic affiliation | Membrane type | Major fatty acidsb | Key enzyme | Apparent Km for CH4 (μM)c | Vmax for CH4 (mmol · g of cells−1 · h−1) | Oxidation inhibited by C2H2, C2H4, DME, and COd | Growth inhibited by elevated NH3 concn | CH4 required to maintain activity | % Assimilation of oxidized CH4e |
|---|---|---|---|---|---|---|---|---|---|---|
| MAB | ||||||||||
| Group 1 | γ-Proteobacteria | Stacked, central | 14:0, 16:0, and 16:1 species | pMMO (+ some sMMO) | 0.8–32 | 10–31 | + | + | + | 29–62 |
| Group 2 | α-Proteobacteria | Flat, peripheral | 18:1 species | pMMO (+ some sMMO) | 0.8–32 | 10–31 | + | + | + | 29–62 |
| Soil high affinity | ? | ? | 18:1 species | ? | 0.01–0.06 | ? | + | + | + | 20–54 |
| AAOB | ||||||||||
| Group 3 | β-Proteobacteria | Flat, peripheral | 16:0 and 16:1 species | AMO | 2,000 | 0.03–0.59 | + | − | − | 0–17 |
| Group 4 | γ-Proteobacteria | Stacked, central | 16:0 and 16:1 species | AMO | 6.6 | 0.01–0.08 | + | − | − | 1–47 |
A major fatty acid is present at a concentration of >10% in at least one member of each group.
The values for nitrifiers were based on the Ki of CH4 for ammonia oxidation.
DME, dimethyl ether.
The fate of labelled methane in nitrifiers is not known. The apparent assimilation could be due to nonspecific labelling by formaldehyde or assimilation at the level of CO2.