Table 1.
Details of the 31 group A Streptococcus (GAS) strains
| Isolate | Household | ST | emm type | SNP variant | SRA number |
|---|---|---|---|---|---|
| 2090-1 | A | 10 | 70 | No SNPs | SAMN03988125 |
| 2097-1 | A | 10 | 70 | No SNPs | SAMN03988127 |
| 2096-1 | A | 332 | 166·1 | CCGA | SAMN03988126 |
| 1023-1 | B | 332 | 166·1 | CAGG | SAMN03988121 |
| 2245-1 | B | 332 | 166·1 | TAGG‡ | SAMN03988122 |
| 1024-1* | C | 11 | 53 | SAMN03988123 | |
| 2232-1 | C | 176 | 58 | No SNPs | SAMN03988124 |
| 1028-1 | D | 10 | 70 | No SNPs | SAMN03988118 |
| 2237-1 | D | 10 | 70 | No SNPs | SAMN03988119 |
| 2243-1 | D | 332 | 166·1 | CCTG | SAMN03988120 |
| 2241-1* | E | 205 | 230 | SAMN03988130 | |
| 2240-1 | E | 332 | 166·1 | CCGA | SAMN03988129 |
| 2229-1 | E | 330† | 164·3 | No SNPs | SAMN03988128 |
| 2102-1* | F | 304 | 108 | CTA | SAMN03988132 |
| 2099-1 | F | 332 | 166·1 | CCTG | SAMN03988131 |
| 2103-1* | F | 332 | 166·1 | CCGG | SAMN03988133 |
| 2095-1* | G | 176 | 58 | No SNPs | SAMN03988138 |
| 2091-1 | G | 304 | 108 | TGG | SAMN03988134 |
| 2093-1 | G | 304 | 108 | TGG | SAMN03988136 |
| 2094-1 | G | 304 | 108 | CTA | SAMN03988137 |
| 2092-1 | G | 332 | 166·1 | CCGG | SAMN03988135 |
| 1020-1 | H | 10 | 70 | No SNPs | SAMN03988139 |
| 1021-1* | H | 10 | 70 | No SNPs | SAMN03988140 |
| 2098-1* | I | 182 | 205 | G | SAMN03988141 |
| 2242-1 | I | 182 | 205 | A | SAMN03988142 |
| 1019-1 | J | 330† | 164·3 | No SNPs | SAMN03988143 |
| 2088-1* | J | 330† | 164·3 | No SNPs | SAMN03988144 |
| 2233-1* | K | 641 | 219 | No SNPs | SAMN03988145 |
| 2235-1 | K | 641 | 44 | No SNPs | SAMN03988146 |
| 2236-1 | K | 641 | 219 | No SNPs | SAMN03988147 |
| 2238-1 | K | 641 | 219 | No SNPs | SAMN03988148 |
SNP, Single nucleotide polymorphism; SRA, short read archive.
*
Isolate used as the ‘reference’ assembly for that sequence type (ST).
†
Single locus variant of ST330.
The SNP (single nucleotide variant) column refers to the SNP variants within each of the STs. (See Supplementary Table S1 for details of these SNPs.) Where there is only one representative of a ST, the cell is left blank.