Table 3.
Farm reference | C score | P value | Unique combinations | P value | ||
---|---|---|---|---|---|---|
Observed | Expected | Observed > expected | Observed | Expected | Observed > expected | |
1 | 3·33 | 3·52 | 1 | 4·01 | 3·55 | 0·55 |
2 | 4·66 | 5·07 | 1 | 5·01 | 5·02 | 1 |
3 | 7·33 | 7·27 | 0·56 | 5·01 | 5·02 | 1 |
4 | 7·33 | 6·68 | 0·039* | 5·01 | 6·86 | 1 |
5 | 3·01 | 3·01 | 1 | 4·01 | 4·01 | 1 |
6 | 5·01 | 5·01 | 1 | 4·01 | 4·01 | 1 |
7 | 4·01 | 4·01 | 1 | 3·01 | 3·01 | 1 |
8 | 8·01 | 8·31 | 1 | 5·01 | 5·01 | 1 |
9 | 2·02 | 2·02 | 1 | 4·01 | 4·01 | 1 |
10 | 5·33 | 5·33 | 1 | 4·01 | 4·01 | 1 |
11 | 7·33 | 7·66 | 0·55 | 6·01 | 6·56 | 0·97 |
12 | 1·66 | 1·67 | 1 | 3·01 | 3·01 | 1 |
13 | 4·01 | 3·76 | 1 | 4·01 | 5·46 | 1 |
14 | 2·66 | 2·71 | 0·57 | 4·01 | 4·01 | 1 |
15 | 2·16 | 2·38 | 1 | 5·01 | 4·58 | 0·58 |
16 | 1·33 | 1·33 | 1 | 5·01 | 5·02 | 1 |
17 | 2·33 | 2·33 | 1 | 4·01 | 4·01 | 1 |
18 | 2·33 | 2·32 | 0·43 | 5·01 | 5·56 | 1 |
19 | 7·66 | 7·42 | 0·43 | 8·01 | 6·61 | 0·078 |
20 | 2·16 | 2·33 | 1 | 5·01 | 5·01 | 1 |
21 | 1·01 | 1·01 | 1 | 4·01 | 4·01 | 1 |
22 | 1·16 | 1·28 | 1 | 5·01 | 4·51 | 0·51 |
23 | 10·01 | 10·11 | 0·62 | 9·01 | 8·43 | 0·51 |
24 | 8·66 | 7·62 | 2·01 | 5·01 | 5·73 | 0·99 |
25 | 3·01 | 3·01 | 1 | 4·01 | 4·01 | 1 |
26 | 12·01 | 10·53 | 0·5 | 5·01 | 5·69 | 1 |
27 | 3·01 | 3·51 | 1 | 7·01 | 6·21 | 0·29 |
28 | 3·66 | 3·65 | 0·61 | 7·01 | 6·78 | 0·68 |
29 | 1·33 | 1·51 | 1 | 6·01 | 5·58 | 0·58 |
30 | 1·01 | 1·01 | 1 | 5·01 | 5·02 | 1 |
31 | 4·66 | 4·66 | 1 | 4·01 | 4·01 | 1 |
32 | 1·33 | 1·33 | 1 | 3·01 | 3·01 | 1 |
33 | 2·66 | 2·66 | 1 | 3·01 | 3·01 | 1 |
34 | 3·51 | 3·92 | 1 | 6 | 5·75 | 0·75 |
35 | 1·51 | 1·73 | 1 | 5·01 | 4·06 | 0·61 |
36 | 1·01 | 1·01 | 1 | 3·01 | 3·01 | 1 |
37 | 8·16 | 6·34 | 0·04* | 6·01 | 6·42 | 0·95 |
38 | 3·33 | 3·37 | 1 | 7·01 | 6·78 | 0·69 |
39 | 6·01 | 5·71 | 0·33 | 6·01 | 6·62 | 0·92 |
40 | 2·33 | 2·33 | 1 | 3·01 | 3·01 | 1 |
41 | 2·01 | 2·01 | 1 | 3·01 | 3·01 | 1 |
42 | 11·01 | 10·63 | 0·056 | 6·01 | 6·5 | 0·98 |
Models in which the null hypothesis (the observed C scores or the number of unique combinations of immune response against virus species were more or equally frequent to that expected by chance) was rejected (P values <0·05) are indicated by an asterisk (*). A total of 10 000 simulations were performed.