Table 1.
Nucleotide sequences of LAMP primers (sets 1 and 2) designed for detection of Leishmania promastigotes
Assay | Primer type | Primer length | Sequence | Amplicon size | Target gene |
---|---|---|---|---|---|
LAMP set 1 | FIP (F1c-F2) | 39 | 5′-CACCGGACGCACTAAACCCC-GTGCTTTCCCATCGCAACT-3′ | 198 | FR796 423 Leishmania major strain Friedlin complete genome, chromosome 27 from nt 990 604–990 773 |
BIP (B1-B2c) | 39 | 5′-TCCGGCCGTAACGCCTTTTC-CAGTACGTTCTCCCCCGAA-3′ | |||
F3 | 20 | 5′-ATTATGGAGCTGTGCGACAA-3′ | |||
B3 | 20 | 5′-AGAATTTCACCTCTGACGCC-3′ | |||
LAMP set 2 | FIP (F1c-F2) | 41 | 5′-TGGGTAAAACCCGCCGATGAG-GCTGCCCAGTAGAATTCAGA-3′ | 190 | FR796 423 Leishmania major strain Friedlin complete genome, chromosome 27 from nt 990 305 to 990 492 |
BIP (B1-B2c) | 42 | 5′-GGTCGAATTCTTCTCTGCGGGA-CATCACAGACCTGCTGTTGC-3′ | |||
F3 | 19 | 5′-CGTCAACGGACGAGATCCA-3′ | |||
B3 | 19 | 5′-CGCCCAGAACATTGAGGAG-3′ |