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. 2022 May 17;13:872470. doi: 10.3389/fimmu.2022.872470

Table 2.

Docking profile of NSC828788 (NLOC-015A) with YAP1/EGFR/MEK1/mTOR.

mTOR EGFR MEK-1 Yap1
ΔG (kcal/mol) –9.10 –9.5 –9.80 –8.40
Conventional
H-bonds
Ser2165 (1.76)
Lys2187 (2.25)
Val2240 (1.76)
Cys797 (2.69) Ile216 (3.37)
Lys97 (2.85)
Asp208 (3.44)
Tyr219 (2.29)
Lys221 (2.93)
His229 (3.37)
Alkyl interactions Pro2169, Leu2185 Leu718, Lys745 Met219, Leu215, Leu118
Ile141
Fluorine Glu2190 (2.25), Gly2238 (3.47), Trp2239 (3.48) Asp855 (3.48) Gln213 (3.28)
Pi-pi stacked Trp223 Phe723 Thr219, Tyr219
PI-sigma Leu2185 Val726
Pi-anion Asp2357 Asp855 Asp190, Asp208
Pi-cation Lys221
Pi-sulfur Met143
van der Waals forces Ile2237, Ile2163, Gln2167, Met2345, Ile2356 Gly857, Leu858, Asn842, Arg841, Leu844, Gly796, Ala743, Met790 Val211, Leu115, Ser212, Phe209, Gly210, Phe129, Ile99, Arg189, Arg234, Met230
Hydrophobic contacts Leu718a (3.66)-atm5872
Phe723a (3.46)-atm5875
Lys745a (3.73)-atm5863
Leu718a (3.66)-atm5872
Phe723a (3.46)-atm5876
Lys745a (3.73)-atm5863
Ile141a (3.54)-atm2767
Asp190a (3.74)-atm2759
Ala208a (3.90)-atm1418
Phe224a (3.94)-atm1421
Leu279a (3.81)-atm1423
Thr309a (3.87)-atm1414
Val311a (3.87)-atm1411
Leu367a (3.98)-atm1425
Phe370a (3.80)-atm1425
Ile372a (3.95)-atm1415
Phe392a (3.76)-atm1419
Phe392a (3.91)-atm1425

mTOR, mammalian target of rapamycin; EGFR, epidermal growth factor receptor; MEK-1, mitogen-activated protein kinase/extracellular signal-regulated kinase kinase 1; Yap, yes-associated protein.