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. Author manuscript; available in PMC: 2022 Dec 7.
Published in final edited form as: Cell Metab. 2021 Oct 27;33(12):2428–2444.e8. doi: 10.1016/j.cmet.2021.10.003
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Mouse polyclonal anti-ATP5A abcam ab14748
Mouse polyclonal anti-NDUFS3 abcam ab14711
Rabbit polyclonal anti-GLUD1 Sigma-Aldrich HPA061369
Rabbit polyclonal Anti-Histone H3 (acetyl K9) abcam Ab4441
Rabbit polyclonal Anti-Relish RayBiotech RB-14-0004
Rabbit polyclonal anti-beta-actin Cell Signaling 4967
Goat Anti-Rabbit IgG HRP-conjugate BioRad 1706515
Goat Anti-Mouse IgG HRP-conjugate BioRad 1706516
Alexa Flour 488-conjugated Anti-Rabbit IgG Jackson Immunoresearch 119191
Chemicals, Peptides, and Recombinant Proteins
Alexa Fluor 555 Phalloidin Thermo Fisher Scientific A34055
Alexa Fluor 488 Phalloidin Thermo Fisher Scientific A12379
DAPI (4’,6-Diamidino-2-Phenylindole, Dihydrochloride) Thermo Fisher Scientific D1306
Drosophila Agar, Type II Genesee 66-103
Malt Extract Genesee 62-110
Inactive Dry yeast Genesee 62-106
Cornmeal Genesee 62-101
Propionic acid VWR TCP0500-500mL
Methyl 4-Hydroxybenzoate VWR 97061-946
Sucrose VWR 97063-788
Trizol Life Technologies 15596018
Superscript III Reverse Transcriptase Life Technologies 2129278
iTaq Universal SYBR Green Supermix BioRad 1725121
Nitrocellulose membrane VWR 10600006
Oil Red O abcam ab150678
Nile Red Life Technologies N1142
Phosphoric acid VWR 97064-780
Brilliant blue Sigma-Aldrich B0149
ECL Western Blotting Substrate Pierce 32106
L-Glutamate abcam Ab120049
Biotin Sigma-Aldrich B4639,14400
D-Pantothenic acid Sigma-Aldrich P5155
L-Ascorbic acid Sigma-Aldrich A7506
DreamTaq PCR Master Mix Thermo Fisher Scientific K1081
Xho I New England BioLab R0146S
NotI-HF New England BioLab R3189S
T4 DNA Ligase New England BioLab M0202T
RNase A QIAGEN 19101
Protease Inhibitor Cocktail Thermo Fisher Scientfic 78440
Proteinase K VWR 0706
LiCl Amresco 0416-100G
KCl J.T.Baker 3052-01
CaCl2 Macron 4160-12
PMSF Thermo Fisher Scientific 36978
Bovine Serum Albumin VWR 97061
Critical Commercial Assays
StanBio Liquicolor Triglycerides Kit Fisher SB-2100-430
Bio-Rad Protein Assay Bio-Rad 5000006
TMRE-Mitochondrial Membrane Potential Assay Kit abcam Ab113852
QIAquick PCR purification Kit QIAGEN 28104
QIAquick Gel extraction Kit QIAGEN 28704
QIAprep spin miniprep Kit QIAGEN 27104
Plasmid midi Kit QIAGEN 12143
Glutamate Assay Kit Sigma-Aldrich MAK004
α-Ketoglutarate Assay Kit Sigma-Aldrich MAK054
Deposited Data
Raw and analyzed RNA sequencing data This paper GEO: GSE160652
Experimental Models: Organisms/Strains
D. melanogaster: w1118 Bloomington Drosophila Stock Center and (Hazelrigg et al., 1984) BDSC: 3605;
FlyBase: FBst0003605
D. melanogaster: Act88FGal4 (w*; P{Act88F-GAL4.1.3}3) Bloomington Drosophila Stock Center and (Gajewski and Schulz, 2010) BDSC: 38461; FlyBase: FBst0038461
D. melanogaster: MhcGal4 (w*; P{Mhc-GAL4.K}2/TM3, Sb1) Bloomington Drosophila Stock Center and (Klein et al., 2014) BDSC: 55133; FlyBase: FBst0055133
D. melanogaster: PplGal4 (w*; P{ppl-GAL4.P}2) Bloomington Drosophila Stock Center and (Zinke et al., 1999) BDSC: 58768; FlyBase: FBst0058768
D. melanogaster: LppGal4 (w[*]; P{w[+mC]=Lpp-GAL4.B}3) Bloomington Drosophila Stock Center and (Brankatschk and Eaton, 2010) BDSC: 84317; FlyBase: FBst0084317
D. melanogaster: tubP-Gal80ts (P{tubP-GAL80ts}20) Bloomington Drosophila Stock Center and (Ferris et al., 2006) BDSC: 65406; FlyBase: FBst0065406
D. melanogaster: UAS-Apoltp RNAi (y1sc*v1; P{TRiP.HMC03294}attP2) Bloomington Drosophila Stock Center and (Perkins et al., 2015) BDSC:51937; FlyBase: FBst0051937
D. melanogaster: UAS-Rfabg/Apolpp RNAi (y1v1; P{TRiP.HM05157}attP2) Bloomington Drosophila Stock Center and (Perkins et al., 2015) BDSC:28946; FlyBase: FBst0028946
D. melanogaster: UAS-Rfabg/Apolpp RNAi (y1sc* v1; P{TRiP.HMS00265}attP2/TM3) Bloomington Drosophila Stock Center and (Perkins et al., 2015) BDSC:33388; FlyBase: FBst0033388
D. melanogaster: UAS-ATPsynbeta RNAi (y [1] v [1]; P{y[+t7.7] v[+t1.8] =TRiP.JF02892} attP2) Bloomington Drosophila Stock Center and (Perkins et al., 2015) BDSC: 28056; FlyBase:FBgn0010217
D. melanogaster: UAS-luciferase RNAi (y1v1; P{TRiP.JF01355}attP2) Bloomington Drosophila Stock Center and (Perkins et al., 2015) BDSC: 31603; FlyBase: FBst0031603
D. melanogaster: UAS-Gdh RNAi (y [1] sc[*] v[1] sev[21]; P{y[+t7.7] v[+t1.8]=TRiP.GLC01815}attP2) Bloomington Drosophila Stock Center and (Perkins et al., 2015) BDSC: 53255; FlyBase:FBgn0001098
D. melanogaster: UAS-Gdh (y [1] w[67c23]; P{y[+mDint2] w[+mC] =EPgy2} Gdh[EY07150]) Bloomington Drosophila Stock Center and (Bellen et al., 2004) BDSC: 20165; FlyBase:FBgn0001098
D. melanogaster: UAS-dmGlut RNAi (y1 sc* v1 sev21; P{TRiP.HMS01615}attP2/TM3, Sb) Bloomington Drosophila Stock Center and (Perkins et al., 2015) BDSC: 36724; FlyBase:FBgn0010497
D. melanogaster: UAS-Rel RNAi (w1118; P{GD1199} v49413) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 49413; FlyBase: FBst0468440
D. melanogaster: UAS-Rel RNAi (w1118; P{KK109851} VIE-260B) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 108469; FlyBase: FBst0480279
D. melanogaster: UAS-Key RNAi (w1118; P{GD1249} v7723) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 7723; FlyBase: FBst0470808
D. melanogaster: UAS-Dredd RNAi (w1118; P{KK110428} VIE-260B) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 104726; FlyBase: FBst0476565
D. melanogaster: UAS-PGRP-LC RNAi (w1118; P{KK105287} VIE-260B) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 101636; FlyBase: FBst0473509
D. melanogaster: UAS-PGRP-LE RNAi (w1118; P{GD14089} v23664) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 23664; FlyBase: FBst0455134
D. melanogaster: UAS-White RNAi (GD) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 30033; FlyBase: FBgn0026792
D. melanogaster: UAS-Gdh RNAi (w1118; P{GD11605} v22059) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 22059; FlyBase:FBgn0001098
D. melanogaster: UAS-Smvt RNAi (w1118; P{KK105033} VIE-260B) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 102662; FlyBase:FBgn0039873
D. melanogaster: UAS-Smvt RNAi (w1118; P{GD12439} v40650/TM3) Vienna Drosophila RNAi Center and (Dietzl et al., 2007) VDRC: 40650; FlyBase:FBgn0039873
D. melanogaster: UAS-Smvt This paper N/A
D. melanogaster: UAS-LD-GFP (Yu et al., 2011) N/A
D. melanogaster: CGGal4 (w*; P{CG-GAL4.A}) (Hennig et al., 2006) N/A
D. melanogaster: TubGSGal4 (y1w*; TubGeneSwitch/CyO) (Sykiotis and Bohmann, 2008) N/A
D. melanogaster: Drosocin-GFP (Chatterjee et al., 2016b) N/A
D. melanogaster: UAS-Rpr (Aplin and Kaufman, 1997) N/A
D. melanogaster: Hml∆G4, UAS-GFP (Sinenko and Mathey-Prevot, 2004) N/A
Oligonucleotides
Primers for Dipt, see Table S1 This paper N/A
Primers for Dro, see Table S1 This paper N/A
Primers for AttA, see Table S1 This paper N/A
Primers for CecA, see Table S1 This paper N/A
Primers for Gdh, see Table S1 This paper N/A
Primers for Smvt, see Table S1 This paper N/A
Primers for Actin 5c, see Table S1 This paper N/A
Primers for P. entomophila, see Table S1 This paper N/A
Primers for Erwinia carotovora carotovora15, see Table S1 This paper N/A
Primers for Smvt-pUAST, see Table S1 This paper N/A
Primers for R1 (Gdh locus), see Table S1 This paper N/A
Primers for R2 (Gdh locus), see Table S1 This paper N/A
Primers for R3 (Gdh locus), see Table S1 This paper N/A
Primers for R4 (Gdh locus), see Table S1 This paper N/A
Primers for R5 (Gdh locus), see Table S1 This paper N/A
Primers for Act5cP (promoter region), see Table S1 This paper N/A
Primers for DroP (promoter region), see Table S1 This paper N/A
Primers for DiptP (promoter region), see Table S1 This paper N/A
Drosophila Negative Control (NC) Primer Set 1 Active Motif 71028
Software and Algorithms
ImageJ NIH Image https://imagej.net/ImageJ
Heatmapper University of Alberta http://www.heatmapper.ca/expression/
FlyMine Cambridge University https://www.flymine.org//flymine/begin.do
FlyBase N/A https://flybase.org/
DNA Sequencing Eton Bioscience https://www.etonbio.com/
Generation of Transgenic Flies Rainbow Transgenic Flies https://www.rainbowgene.com/
JASPAR Database N/A http://jaspar.genereg.net/
Other
Illumina HiSeq 2500 Illumina N/A
Leica M165FC system Leica N/A
StepOnePlus Real-Time PCR systems Applied Biosystems N/A
Nikon Eclipse Ti confocal system Nikon N/A
Capillaries VWR 53432-706
Bioruptor/sonicator Diagenode UCD-200
Pierce Protein A magnetic beads Thermo Fisher Scientific 88845
QUBIT 4 Fluorometer Thermo-Fisher Scientific N/A
Epoch Microplate BioTek N/A
Ecc15 Bacteria Basset et al., 2000 N/A
Pseudomonas entomophila (P.e.) Liehl et al., 2006 N/A