Table 1.

Overview of MTBC members included in this study

Group	MTBC membera	Lineageb	Lineage synonymc	Major spoligotype(s)c	No.	Resistance (%) by resistance type
						DS-TB	DR-TB	MDR-TB	XDR-TB
A	M. africanum	5	West African I	AFRI2	2	100	0	0	0
		6	West African II	AFRI1	3	100	0	0	0
	M. bovis d				2	0	100	0	0
	M. bovis BCGe				1	0	100	0	0
	M. caprae				1	100	0	0	0
	M. microti				1	100	0	0	0
	M. pinnipedii				1	100	0	0	0
B	M. tuberculosis	2	East Asian	Beijing	63	17	2	51	31
		3	East African-Indian	CAS	12	92	0	8	0
		4	Euro-American	Haarlem, LAM, T, X	113	42	9	36	13
		7			3	100	0	0	0
C	M. tuberculosis	1	Indo-Oceanic	EAI	127	64	10	24	2
D	M. canettii f				21	0	100	0	0
Probably resistantg	M. tuberculosis	1	Indo-Oceanic	EAI	4	100	0	0	0
		2	East Asian	Beijing	2	50	0	50	0

^aIn accordance with current CLSI guidelines, we considered M. canettii to be part of MTBC, although this classification is disputed.^54,55

^bBased on Coll et al.²⁹

^cBased on Gagneux & Small.⁵⁶

^dLargely intrinsically resistant to pyrazinamide.³¹

^eIntrinsically resistant to pyrazinamide and cycloserine.⁵²

^fIntrinsically resistant to pyrazinamide.³¹

^gSee Table 2 for more details.