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. 2022 May 31;13:3012. doi: 10.1038/s41467-022-30680-2

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — a The mean number of bases identified per autosome as “Satellite” by RepeatMasker for the n = 5 hifiasm (blue) and n = 5 Shasta (orange) assemblies, where error bars indicate the 95% confidence interval. The black dots represent values from the CLR-based ARS-UCD1.2. Dashed lines indicate the autosome-wide mean for the respective color of points. Mean values of 0 (e.g., chromosome 20) are not shown due to the log scale. b Similar to (a), but the number of bases in telomeric repeats within 10 Kb of chromosome ends. c Similar to (a), but the number of scaffold gaps. d Chromosome ideograms for ARS-UCD1.2 (center), and Brown Swiss assemblies produced by hifiasm (left) and Shasta (right). Scaffolded contigs alternate white/gray across gapped regions, which are colored red. Chromosomes which are predicted to extend from centromere to telomere are bolded in blue, of which 7 and 3 are also gapless for hifiasm and Shasta respectively. Arrows indicate the centromere (C) to telomere (T) directionality of the chromosomes (this applies only to autosomes, as the X chromosome is submetacentric).