Table 3.
List of all detected TF families with DEGs
| TF family | Type | Arabidopsis genes | Detected genes | DEG up | DEG down |
|---|---|---|---|---|---|
| ABI3VP1 | TF | 57 | 27 | 1 | 1 |
| Alfin-like | TF | 7 | 10 | 0 | 1 |
| AP2-EREBP | TF | 146 | 34 | 9 | 1 |
| ARF | TF | 23 | 15 | 2 | 1 |
| ARID | Other | 10 | 17 | 1 | 1 |
| AUX/IAA | Other | 28 | 1 | 1 | 0 |
| BES1 | TF | 8 | 10 | 0 | 1 |
| bHLH | TF | 136 | 44 | 5 | 3 |
| bZIP | TF | 70 | 49 | 1 | 5 |
| C2C2-CO-like | TF | 17 | 4 | 0 | 1 |
| C2C2-GATA | TF | 29 | 13 | 2 | 0 |
| C2H2 | TF | 99 | 43 | 3 | 3 |
| C3H | TF | 68 | 90 | 7 | 1 |
| CCAAT | TF | 43 | 39 | 3 | 0 |
| Coactivator p15 | Other | 3 | 2 | 2 | 0 |
| CSD | TF | 4 | 3 | 2 | 0 |
| DBP | TF | 4 | 10 | 6 | 0 |
| EIL | TF | 6 | 8 | 2 | 0 |
| FAR1 | TF | 17 | 26 | 2 | 1 |
| FHA | TF | 17 | 20 | 3 | 0 |
| G2-like | TF | 40 | 20 | 2 | 0 |
| GNAT | Other | 32 | 34 | 1 | 0 |
| GRAS | TF | 33 | 17 | 3 | 3 |
| HB | TF | 91 | 19 | 1 | 0 |
| HSF | TF | 23 | 19 | 9 | 0 |
| LOB | TF | 43 | 14 | 1 | 0 |
| LUG | Other | 2 | 6 | 1 | 0 |
| MADS | TF | 105 | 30 | 2 | 2 |
| MBF1 | Other | 3 | 7 | 2 | 0 |
| mTERF | TF | 34 | 11 | 1 | 1 |
| MYB | TF | 147 | 55 | 2 | 2 |
| MYB-related | TF | 65 | 71 | 14 | 1 |
| NAC | TF | 104 | 26 | 3 | 0 |
| Orphans | TF | 83 | 35 | 4 | 1 |
| PHD | Other | 45 | 92 | 3 | 1 |
| Pseudo ARR-B | Other | 5 | 5 | 1 | 1 |
| RWP-RK | TF | 14 | 10 | 2 | 1 |
| SET | Other | 33 | 46 | 3 | 0 |
| Sigma70-like | TF | 6 | 6 | 3 | 0 |
| SNF2 | Other | 38 | 57 | 0 | 3 |
| SWI/SNF-BAF60b | Other | 16 | 10 | 1 | 0 |
| TCP | TF | 24 | 5 | 0 | 1 |
| Tify | TF | 15 | 9 | 0 | 1 |
| TRAF | Other | 25 | 16 | 0 | 2 |
| TUB | TF | 10 | 15 | 2 | 0 |
| ULT | TF | 2 | 4 | 0 | 1 |
| VOZ | TF | 2 | 4 | 1 | 0 |
| WRKY | TF | 72 | 22 | 3 | 1 |
List of all detected TF families that contain DEGs. As reference, the Arabidopsis Plant TF Database PlnTFDB with 2,192 gene entries was used (Pérez-Rodríguez et al., 2010; accessed on 4 June 2020). Given are the TF family names, their type (Other = other transcriptional regulator), the number of Arabidopsis genes belonging to the respective family, the number of detected Tobacco genes putatively belonging to the respective family and the number of DEGs (log2FC > |1|, FDR < 0.005) within the family.