Fig. 5.

Concordance of imputed genotypes, split according to genotype in the HQ data. Imputation was performed on data in which the five evaluation individuals were downsampled to 1× coverage, using imputation configuration 3 (Table 1), and the resulting data was filtered for minimum genotype probability of 0.99. Fully colored bars indicate markers that had overlapping reads in the downsampled data, and shaded bars indicate sites that did not.