Table 1.
Motifs enriched in the 5′-UTR of genes preserved in the PaPPC-1E1c module
| Motif name(s) | JASPAR matrix ID(s) | Consensus sequencea | Associated TF(s) | Arabidopsis ortholog(s) | E-value | Occurrences |
|---|---|---|---|---|---|---|
| RVE7L | MA1191.1 | HHHVAAAATATCTWA | RVE 7-like (RVE7L) | AT3G10113 | 6.09e-8 | 9 |
| RVE1 | MA1184.1 | HHVWAAATATCTWH | RVE1 | AT5G17300 | 6.09e-5 | 9 |
| RVE8 | MA1182.1 | AGATATTTTWDD | LHY-CCA1-like 5 (LCL5)/RVE8 | AT3G09600 | 9.21e-5 | 10 |
| RVE4 | MA1187.1 | AGATATTTTT | LHY-CCA-like 1 (LCL1)/RVE4 | AT5G02840 | 6.96e-4 | 8 |
| RVE5, RVE6 | MA1190.1, MA1183.1 | AGATATTTTTD | RVE6, RVE5 | AT5G52660, AT4G01280 | 8.70e-4 | 8 |
| LHY1 | MA1185.1 | AGATATTTTN | LHY1 | AT1G01060 | 9.44e-4 | 10 |
| EPR1 | MA1401.1 | RAAAATATCTWA | Early-phytochrome-responsive 1 (EPR1)/(RVE7 | AT1G18330 | 2.96e-3 | 8 |
| CCA1 | MA0972.1 | AAATATCT | CCA1 | AT2G46830 | 2.28e-2 | 10 |
a
Bold text indicates EE (AAATATCT) or GATA (HGATAR) motifs.