Table 1.
TOM1 homologs in tomato
| Proposed Gene Name | SGNa Gene ID | SGNa BLASTb to Arabidopsis TOM1 |
Former Gene Name | GenBank ID | NCBIc Reference Sequence ID | Length (Amino Acids) | Normalized Expressiond (RPKM) | |
|---|---|---|---|---|---|---|---|---|
| Identity (%) | E-value | |||||||
| SlTOM1a | Solyc04g008540 | 60 | 6.00E−102 | LeTH1 | AB193041 | NP_001234096.1 | 295 | 16.14 |
| SlTOM1b | Solyc01g105270 | 67 | 1.00E−112 | LeTH2 | AB193042 | NP_001234100.1 | 297 | 3.93 |
| SlTOM1c | Solyc02g080370 | 78 | 4.00E−153 | LeTH3 | AB193043 | NP_001234306.1 | 288 | 26.96 |
| SlTOM1d | Solyc01g007900 | 61 | 4.00E−101 | XP_010315372.1 | 295 | 7.76 | ||
| SlTOM1e | Solyc09g005240 | 44 | 4.00E−62 | 246 | 0 | |||
a
Solanaceae Genomics Network (https://solgenomics.net/).
b
SGN blastn (https://solgenomics.net/tools/blast/), database: tomato genome coding sequences (ITAG release 4.0), query: Arabidopsis TOM1 amino acid sequence.
c
National Center for Biotechnology Information (https://www.ncbi.nlm.nih.gov/).
d
Tomato functional genomics database (http://ted.bti.cornell.edu/cgi-bin/TFGD/digital/home.cgi), Experiment D004: Transcriptome analysis of various tissues in tomato cultivar Heinz and the wild relative Solanum pimpinellifolium; Data S0593: Heinz leaves.