Table 1.
Genome assembly metrics.
| Genome | Current | Recently published | Second longest contig N50 |
|---|---|---|---|
| GCF_016086655.3 | Skern-Mauritzen et al. ( 2021 ) | GCA_905330665.1 | |
| Size | 647 Mb* | 695 Mb | 632 Mb* |
| Contigs | 8,671* | — | 8,089* |
| Contig N50 | 4.5 Mb* | 6 kb | 0.5 Mb* |
| Genes/Pseudogenes | 19,181* | 13,081 | — |
| Busco | 96% complete, 92.5% single, 3.5% duplicate, 0.8% fragmented, 3.3% missing* | 92.4% complete, 3.2% fragmented | — |
| Percent masked | 43.25%* | 60% | — |
| Read N50 | 8,248 | — | — |
| Read coverage | 63 | 175 | 96* |
| Scaffolds | 8,066* | 36,095 | 297* |
| Scaffold N50 | 48.5 Mb* | 478 kb | 51.1 Mb* |
| Fraction of the genome that was unplaced | 3.3%* | — | 3.6%* |
Experimental cytometric reports of L. salmonis genome size range from ∼567 Mb (Gregory)—1,500 Mb (Wyngaard et al. 2022). Annotation metrics and BUSCO scores were reported from GCF_016086655.2 (NCBI), which was updated to remove contamination sequences for GCF_016086655.3.
*
Reported by NCBI, “—” not known