| Chemicals, peptides and recombinant proteins |
|
| Bacille Calmette-Guérin Vaccine (BCG) |
Statens Serum Institute, Copenhagen, Denmark; Merck, USA; Serum Institute of India Limited, Pune, India |
Strain 1331; TICE; SIIL |
| Hepatitis B Vaccine (HBV) |
Recombivax |
NDC#: 0006-4981-00 |
| Lipopolysaccharide (LPS) |
Sigma-Aldrich |
From E. coli serotype |
| Phosphate Buffered Saline (PBS) |
Gibco, Life Technologies |
Cat#: 10010023 |
| Roswell Park Memorial Institute (RPMI) medium |
Gibco, Life Technologies Europe BV |
RPMI-1640 void of L-Glutamine |
| Sodium pyruvate (Na-pyruvate) |
Lonza, Copenhagen, Denmark |
Cat#: 13-115E |
| L-Glutamine-Penicillin-Streptomycin |
Gibco, Life Technologies |
Cat#: 10378016 |
| Purified protein derivative (PPD) |
Statens Serum Institute, Copenhagen, Denmark |
From M. tuberculosis Tuberculin PPD RT23 “SSI” |
| Adenosine deaminase assay kit |
Diazyme Laboratories, Poway, CA |
Cat#: DZ117A-K |
| Lysophosphatidylcholine (LPC) kit |
MyBioSource |
Cat#: MBS2700657 |
| TLR 7/8 agonist |
Invivogen |
R848 (Resiquimod) Cat#: tlrl-r848 |
| Methanol |
Applied Biosystems, ThermoFisher |
Cat#: 400470 |
| Ammonium acetate |
Invitrogen |
Cat#: AM9070G |
| Dichloromethane |
Applied Biosystems, ThermoFisher |
Cat#: 402152 |
| Luminex Kit |
Invitrogen/Life Technologies, Carlsbad, CA |
Consists of 41 analytes including Th1-, Th2-, and Th17- cytokines, chemokines and hematopoietic factors |
|
| Deposited data |
|
| BCG in vivo and in vitro datasets |
https://www.immport.org
|
ImmPort: SDY1709, SDY1259 |
|
| Experimental model: Organisms/strains |
|
| Metabolomics database |
HMDB |
Version 5.0 |
|
| Software and algorithms |
|
| GraphPad Prism |
Graphpad Software |
|
| R |
https://www.r-project.org
|
3.5.1 Feather Spray |
| R studio |
https://www.rstudio.com/
|
1.1.463 |
| RFmarkerdetector |
https://cran.r-project.org/web/packages/RFmarkerDetector/RFmarkerDetector.pdf
|
1. 0. 1 |
| e1071 |
https://cran.r-project.org/web/packages/e1071/index.html
|
1.7-0 |
| dplyr |
https://cran.r-project.org/web/packages/dplyr/dplyr.pdf
|
0. 7. 8 |
| plyr |
https://cran.r-project.org/web/packages/plyr/plyr.pdf
|
1. 8. 4 |
| RcolorBrewer |
https://cran.r-project.org/web/packages/RColorBrewer/index.html
|
1.1-2 |
| ggplot2 |
https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf
|
3. 1. 0 |
| ggrepel |
https://cran.r-project.org/web/packages/ggrepel/index.html
|
0. 8. 0 |
| ggfortify |
https://cran.r-project.org/web/packages/ggfortify/index.html
|
0. 4. 5 |
| stringr |
https://cran.r-project.org/web/packages/stringr/stringr.pdf
|
1. 3. 1 |
| mixOmics |
https://cran.r-project.org/web/packages/mixOmics/index.html
|
6. 3. 2 |
