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. 2022 Jun 1;22:269. doi: 10.1186/s12870-022-03645-2

Table 1.

Summary of the lllumina degradome sequencing data of unaged and artificially aged WT, MIM164c, and OE164c seeds

Variable Aa-WT A-MIM164c A-OE164c Bb-WT B-MIM164c B-OE164c Total
Number % Number % Number % Number % Number % Number % Number %
Raw reads 23,290,765 n.a.c 39,475,861 n.a. 105,051,201 n.a. 11,574,728 n.a. 23,358,523 n.a. 75,229,379 n.a. 277,980,457 n.a.
Reads< 15 nt in length after removing the 3′-adaptor sequences 115,963 0.5 150,392 0.38 438,675 0.42 52,118 0.45 114,625 0.49 291,424 0.39 1,163,197 0.42
Mappable reads 23,174,802 99.5 39,325,469 99.62 104,612,526 99.58 11,522,610 99.55 23,243,898 99.51 74,937,955 99.61 276,817,260 99.58
Transcript mapped reads 13,086,100 56.19 19,232,591 48.72 49,082,507 46.72 6,072,389 52.46 12,433,643 53.23 35,928,730 47.76 135,835,960 48.8
Unique raw reads 5,910,027 n.a. 7,499,373 n.a. 14,920,325 n.a. 4,409,611 n.a. 6,992,505 n.a. 14,893,430 n.a. 35,326,716 n.a.
Unique reads < 15 nt in length after removing three adaptor sequences 31,617 0.53 41,124 0.55 77,208 0.52 24,911 0.56 37,938 0.54 80,857 0.54 181,550 0.51
Unique mappable reads 5,878,410 99.47 7,458,249 99.45 14,843,117 99.48 4,384,700 99.44 69,54,567 99.46 14,812,573 99.46 35,145,166 99.49
Unique transcript mapped reads 3,675,827 62.2 4,501,572 60.03 7,887,621 52.86 2,797,531 63.44 3,961,237 56.65 8,498,489 57.06 17,031,820 48.21
No. of input transcripts 42,387 n.a. 42,387 n.a. 42,387 n.a. 42,387 n.a. 42,387 n.a. 42,387 n.a. 42,387 n.a.
No. of covered transcripts 33,806 79.76 33,227 78.39 36,332 85.71 34,687 81.83 35,095 82.8 38,044 89.75 39,538 93.28

aA indicates unaged seeds

bB indicates artificially aged seeds

cn.a. indicates not applicable