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. 2022 Jun 1;2:62. doi: 10.1038/s43856-022-00124-5

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — a Ratio of Pseudomonas spp. to all isolates across all time points (n = 283 Pseudomonas isolates). Error bars indicate standard error. Red bars indicate collection timing of Pseudomonas aeruginosa blood culture isolates. b Ratio of P. aeruginosa to all isolates across all time points (n = 155 P. aeruginosa isolates). Error bars indicate standard error. c Identity of all collected Pseudomonas spp. genomes by >95% ANI to reference genome by sample collection type. Other indicates all other surface/water genomes apart from in-room and bathroom sink drain. All genomes were identified as Pseudomonas spp. by MASH. Pseudomonas various genomospecies includes all different genomospecies that did not share >95% ANI with a reference genome. d Cladogram from a core genome alignment of P. aeruginosa genomes. Branches with less than 80% bootstrap support are collapsed. Branches with bootstrap values between 80–95% are labeled. Reference P. aeruginosa genomes included antibiotic-resistant (AR) isolates, clinical isolates, and environmental isolates. Reference MLST is included if it shares a MLST with collected isolates. e Time point mapping of top 8 MLST P. aeruginosa groups by sample collection location. BP before patient and staff move-in.