REAGENT or RESOURCE	SOURCE	IDENTIFIER
Bacterial and Virus Strains
K. pneumoniae CR-HvKP1-5	Patients in our previous studies (Gu et al., 2018; Dong et al., 2018)
E. coli EC600	Laboratory stock
Deposited Data
CR-HvKP1	Dong et al. (2018)	GenBank: CP040534.1-CP040538.1
CR-HvKP2	This study	GenBank: MW598231.1-MW598233.1; GenBank: MW598248.1-MW598249.1
CR-HvKP3	This study	GenBank: MW598234.1-MW598238.1
CR-HvKP4	Dong et al. (2018)	GenBank: CP040540.1-CP040544.1
CR-HvKP5	Dong et al. (2018)	GenBank: CP040546.1-CP040550.1
CR-HvKP3TC-5	This study	GenBank: OM001476.1
CR-HvKP4TC-2	This study	GenBank: OM001477.1-OM001478.1
CR-HvKP4TC-3	This study	GenBank: MW598247.1
CR-HvKP3TC-1	This study	GenBank: MW598242.1-MW598244.1
CR-HvKP1TC-1	This study	GenBank: MW598239.1-MW598240.1
CR-HvKP2TC-1	This study	GenBank: MW598241.1
CR-HvKP1TC-3	This study	GenBank: OM001474.1
CR-HvKP5TC-5	This study	GenBank: OM001479.1-OM001480.1
CR-HvKP3TC-2	This study	GenBank: OM001475.1
Oligonucleotides
	See Table S1
Software and Algorithms
Unicycler	Wick et al. (2017)	Wick, R.R.
RAST	Brettin et al. (2015)	Brettin, T.
BLAST Ring Image Generator (BRIG)	Alikhan et al. (2011)	Alikhan, N.F.
Easyfig	Sullivan et al. (2011)	Sullivan, M.J.
Isfinder&ISsaga	Siguier et al. (2006)	Siguier, P.