Table 1. Details of numbers of lineages and sequences available for each Cosmopolitan subclade at whole genome and N gene level.
Whole genome | N gene | |||||
---|---|---|---|---|---|---|
Subclade | Lineages | Number of sequences | Year of first sequence | Lineages | Number of sequences | Year of first sequence |
AF1a | 2 | 24 | 1984 | 10 | 377 | 1982 |
AF1b | 10 | 251 | 1981 | 10 | 471 | 1981 |
AF1c | 0 | 3 | 1986 | 0 | 6 | 1986 |
AF4 | 0 | 8 | 1950 | 1 | 13 | 1950 |
AM1 | 0 | 4 | 1982 | 6 | 58 | 1981 |
AM2a | 1 | 10 | 1991 | 4 | 136 | 1990 |
AM2b | 0 | 2 | 2009 | 0 | 24 | 1986 |
AM3a | 0 | 5 | 1986 | 20 | 172 | 1985 |
AM3b | 0 | 4 | 1986 | 10 | 108 | 1986 |
AM4 | 0 | 4 | 1974 | 1 | 19 | 1974 |
CA1 | 1 | 25 | 1974 | 9 | 224 | 1974 |
CA2 | 1 | 15 | 1993 | 7 | 106 | 1993 |
CA3 | 0 | 7 | 1991 | 6 | 45 | 1991 |
CE | 1 | 15 | 1990 | 1 | 19 | 1985 |
EE | 1 | 15 | 1986 | 1 | 47 | 1977 |
ME1a | 4 | 101 | 1976 | 4 | 195 | 1976 |
ME1b | 0 | 2 | 1993 | 0 | 7 | 1993 |
ME2 | 4 | 38 | 1989 | 6 | 66 | 1989 |
NEE | 6 | 71 | 1986 | 6 | 78 | 1985 |
WE | 1 | 14 | 1986 | 1 | 148 | 1974 |
YUGCOW | 0 | 2 | 1978 | 0 | 6 | 1978 |
YUGFOX | 0 | 1 | 1972 | 0 | 12 | 1972 |