Table 1.
Cassava AM560-2 reference genome assemblies
| v4.1 | v5.1 | v6.1 | v7.1 | |
|---|---|---|---|---|
| Release | 2009 | 2014 | 2016 | 2019 |
| Primary sequence technology | 454 | 454 | Illumina | PacBio |
| Primary scaffolding data | 454 mate pair | Composite genetic map | Illumina mate pair, fosmid, genetic maps | Illumina mate pair, fosmid, genetic maps |
| Total scaffold length | 533 Mb | 534 Mb | 582 Mb | 669 Mb |
| Total contig length | 419 Mb | 419 Mb | 496 Mb | 667 Mb |
| Number of chromosomal scaffolds | 0 | 18 | 18 | 18 |
| Bases in chromosomes | 0 | 305 Mb | 444 Mb | 606 Mb |
| Contig N50 length (contiguity) | 11 kb | 11 kb | 27 kb | 693 kb |
| Annotated genes | 30,666 | 30,666 | 33,033 | 33,849 |