Table 2.

Accessing key cassava genomic resources

Resource	Portal	url
AM560-2 v6.1	Phytozome	https://phytozome-next.jgi.doe.gov/info/Mesculenta_v6_1
AM560-2 v7.1	Phytozome	https://phytozome-next.jgi.doe.gov/info/Mesculenta_v7_1
W14 assembly (unresolved Manihot)	NCBI	https://www.ncbi.nlm.nih.gov/assembly/GCA_000737105.1
KU50 assembly	NCBI	https://www.ncbi.nlm.nih.gov/assembly/GCA_000737115.1
TME3 assembly	NCBI	https://www.ncbi.nlm.nih.gov/assembly/GCA_003957995.1
60444 assembly	NCBI	https://www.ncbi.nlm.nih.gov/assembly/GCA_003957885.1
HapMapI SNV calls (download)	Phytozome	https://genome.jgi.doe.gov/portal/pages/dynamicOrganismDownload.jsf?organism=Mesculenta, under Mesculenta → v6.1 → diversity
Genomic and phenotypic data and breeding metadata	Cassavabase	https://cassavabase.org/
ICGMC genetic map viewer	Cassavabase	https://cassavabase.org/cview/map.pl?map_id=2
HapMapII sequence and SNP data	Cassavabase	ftp://ftp.cassavabase.org/HapMapII/
HapMapII SNPs (browser)	Cassavabase	https://cassavabase.org/jbrowse_cassavabase/?data=data%2Fjson%2Fhapmap_variants
Bart Lab Cassava Atlas	none	http://shiny.danforthcenter.org/cassava_atlas/