TABLE 1.
The basic characteristics and Physico-chemical properties of CDPK gene family members in potato.
| Subfamily type | Gene name | Gene ID | Chromosome location | CDS length (bp) | AA length (bp) | Molecular weight | pI | Instability index | GRAVY | EF-hand number | Signal peptide | Myristoylation site | Palmitoylation site |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ⅰ | StCDPK1 | PGSC0003DMG400021342 | 1 | 1749 | 582 | 64,626.41 | 5.71 | 41.99 | −0.408 | 4 | No | Y | Y |
| StCDPK2 | PGSC0003DMG400021338 | 1 | 1797 | 598 | 67,601.16 | 5.42 | 44.41 | −0.411 | 4 | No | Y | Y | |
| StCDPK8 | PGSC0003DMG400025435 | 4 | 1746 | 581 | 64,589.29 | 5.54 | 36.41 | −0.42 | 4 | No | Y | Y | |
| StCDPK10 | PGSC0003DMG400023440 | 5 | 1,512 | 503 | 56,374.25 | 5.02 | 44.02 | −0.28 | 4 | No | N | Y | |
| StCDPK11 | PGSC0003DMG400026077 | 6 | 1,506 | 501 | 56,453.55 | 5.69 | 39.53 | −0.368 | 4 | No | N | N | |
| StCDPK15 | PGSC0003DMG400016820 | 10 | 1704 | 567 | 63,366.69 | 5.56 | 40.03 | −0.374 | 4 | No | Y | Y | |
| StCDPK16 | PGSC0003DMG400028229 | 10 | 1824 | 607 | 68,348.03 | 5.58 | 36.32 | −0.451 | 4 | No | Y | Y | |
| StCDPK17 | PGSC0003DMG401028133 | 10 | 1917 | 638 | 70,172.73 | 5.17 | 45.6 | −0.265 | 4 | No | Y | Y | |
| StCDPK19 | PGSC0003DMG401007209 | 10 | 1,635 | 544 | 60,369.47 | 5.31 | 41.6 | −0.411 | 4 | No | Y | Y | |
| StCDPK20 | PGSC0003DMG400000994 | 11 | 1737 | 578 | 64,801.71 | 5.35 | 42.82 | −0.447 | 4 | No | Y | Y | |
| StCDPK21 | PGSC0003DMG400000890 | 11 | 1,518 | 505 | 56,997.05 | 5.49 | 37.76 | −0.368 | 4 | No | N | N | |
| Ⅱ | StCDPK9 | PGSC0003DMG400009883 | 4 | 1,425 | 474 | 53,356.88 | 7.89 | 49.51 | −0.257 | 1 | No | Y | Y |
| StCDPK13 | PGSC0003DMG400022318 | 7 | 1,566 | 521 | 57,862.21 | 6.75 | 29.4 | −0.391 | 4 | No | Y | Y | |
| StCDPK14 | PGSC0003DMG400005829 | 8 | 1,554 | 517 | 57,847.71 | 5.79 | 41.08 | −0.417 | 4 | No | Y | Y | |
| StCDPK22 | PGSC0003DMG400009451 | 11 | 1,575 | 524 | 58,971.02 | 5.77 | 40.04 | −0.504 | 4 | No | Y | Y | |
| StCDPK24 | PGSC0003DMG400027877 | 12 | 1,530 | 509 | 56,625.8 | 6.07 | 37.42 | −0.338 | 4 | No | Y | Y | |
| StCDPK25 | PGSC0003DMG400004646 | 12 | 1,608 | 535 | 59,662.66 | 5.44 | 42.35 | −0.473 | 4 | No | Y | Y | |
| Ⅲ | StCDPK3 | PGSC0003DMG400010704 | 1 | 1,602 | 532 | 60,004.61 | 6.44 | 37.82 | −0.494 | 4 | No | Y | Y |
| StCDPK7 | PGSC0003DMG400013183 | 3 | 1,617 | 538 | 60,908.99 | 6.43 | 36.81 | −0.388 | 4 | No | Y | Y | |
| StCDPK12 | PGSC0003DMG400026908 | 6 | 1,611 | 536 | 61,050.86 | 5.97 | 30.71 | −0.38 | 4 | No | Y | Y | |
| StCDPK18 | PGSC0003DMG400008149 | 10 | 1,575 | 524 | 59,424.7 | 5.95 | 36.01 | −0.527 | 4 | No | Y | Y | |
| StCDPK23 | PGSC0003DMG400033335 | 11 | 1,599 | 532 | 59,737.26 | 6.12 | 38.32 | −0.466 | 4 | No | Y | Y | |
| Ⅳ | StCDPK4 | PGSC0003DMG400027527 | 1 | 1,488 | 495 | 55,392.29 | 5.27 | 39.98 | −0.252 | 2 | No | N | N |
| StCDPK5 | PGSC0003DMG400003564 | 2 | 1,695 | 564 | 63,596.52 | 9.34 | 39.67 | −0.55 | 4 | No | Y | Y | |
| StCDPK6 | PGSC0003DMG400022562 | 3 | 1707 | 568 | 64,172.58 | 9.01 | 45.14 | −0.63 | 4 | No | Y | Y |
AA, amino acid, pI, isoelectric point, N, no, and Y, yes.