TABLE II. Primers and TaqMan probes sequences for Trypanosoma cruzi validated quantitative polymerase chain reaction (qPCR).
Molecular target | Methodology | Primer/Probe sequences (5’-3’) or Kit company/Consortium | Reference |
T. cruzi satellite DNA | Conventional PCR or real time PCR | TcZ-F “GCTCTTGCCCACAMGGGTGC” | 82 |
Tcz-R “CCAAGCAGCGGATAGTTCAGG” | |||
Standardised in-house TaqMan qPCR | Cruzi 1 “ASTCGGCTGATCGTTTTCGA” | 82,85 | |
Cruzi 2 “AATTCCTCCAAGCAGCGGATA” | |||
Cruzi 3 Probe “FAM-CACACACTGGACACCAA-NFQ-MGB” | |||
Comercial real time PCR | Wiener Lab-CONICET-ANLIS MALBRAN-Argentina | 54 | |
RealCycler CHAG; Progenie Molecular, Spain | 60 | ||
TCRUZI DNA.CE Diagnostic Bioprobes Srl, Italy | 61 | ||
Comercial LAMP | Eiken Chemical Company, Japan | 53,59 | |
T. cruzi minicircle DNA | Conventional PCR | 121 “AAATAATGTACGGGKGAGATGCATGA” | 50,51,52,82 |
122 “GGTTCGATTGGGGTTGGTGTAATATA” | |||
Standardised in-house TaqMan qPCR | 32F “TTTGGGAGGGGCGTTCA” | 85 | |
148R “ATATTACACCAACCCCAATCGAA” | |||
71P Probe “FAM-CATCTCACCCGTACATT-BHQ1 a ” | |||
Comercial real time PCR | Real STAR Chagas, ALTONA Diagnostics, Germany | 62 |
a: C locked nucleic acid (LNA) nucleotides.