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. 2022 May 20;13:897843. doi: 10.3389/fpls.2022.897843

Table 2.

Summary of models H0 and HA analyzed in the study. dN, dS, and ω are presented as medians.

Gene H0: m0 HA: m1 2*(HA-H0) p-value
dN dS ω0 lnL dN dS ω lnL
accD 0.0005 0.0019 0.2489 −2437.30 0.000832 0.00428 0.193579 −2433.08 8.44 0.75
atpA 0.0001 0.0021 0.0705 −2272.75 0 0.002509 0.0001 −2266.30 12.90 0.38
atpB 0.0002 0.0022 0.0699 −2221.92 0 0.002701 0.0001 −2213.35 17.14 0.14
atpE 0 0 0.1804 −642.17 0.000001 0.000005 0.0372454 −635.33 13.69 0.32
atpF 0 0 1.1265 −866.78 0.000002 0.000002 124.242 −862.26 9.02 0.70
atpH 0 0 0.0001 −366.55 0.000002 0.000005 0.0001 −366.55 0.000258 1.00
atpI 0.0004 0.0043 0.0857 −1137.90 0.000001 0.004595 0.0001 −1130.12 15.55 0.21
ccsA 0.0022 0.0071 0.3153 −1836.83 0.002604 0.010913 0.169018 −1831.85 9.97 0.62
cemA 0.001 0.0034 0.2884 −1096.08 0.000001 0.000006 0.0001 −1086.23 19.71 0.07
clpP 0 0 0.0694 −935.05 0.000001 0.000004 0.0001 −929.55 11.01 0.53
infA 0.0096 0.0123 0.7783 −269.79 0.013353 0.000013 74.8743 −264.81 9.97 0.62
matK 0.0027 0.0058 0.4631 −2572.82 0.002523 0.006385 0.911524 −2562.74 20.15 0.06
ndhA 0.0008 0.0053 0.1467 −1710.61 0.000002 0.003808 0.329949 −1704.63 11.97 0.45
ndhB 0 0 0.1178 −2133.67 0 0.000006 0.0001 −2129.17 8.99 0.70
ndhC 0 0 0.0916 −566.08 0 0.000005 0.0001 −562.34 7.48 0.82
ndhD 0.0011 0.0108 0.0998 −2601.20 0.00089 0.011321 0.0627638 −2593.10 16.20 0.18
ndhE 0 0 0.0235 −456.81 0 0.000006 0.0001 −454.86 3.92 0.98
ndhF 0.0009 0.0071 0.1292 −2463.23 0.001765 0.007192 0.147131 −2455.95 14.55 0.27
ndhG 0.001 0.005 0.1954 −909.26 0.000003 0.000074 0.0001 −896.00 26.52 0.01
ndhH 0.0005 0.006 0.0866 −1923.38 0.001108 0.003891 0.0698539 −1919.64 7.48 0.82
ndhI 0.0007 0.0061 0.113 −908.57 0.000001 0.008613 0.0001 −902.89 11.35 0.50
ndhJ 0 0 0.3505 −688.53 0 0.000005 0.0001 −686.35 4.38 0.98
ndhK 0 0 0.3155 −1048.40 0 0.000006 0.0001 −1041.06 14.69 0.26
petA 0.0004 0.003 0.1455 −1568.16 0.000002 0.004392 0.0001 −1555.79 24.74 0.02
petD 0 0 0.0307 −741.85 0.000001 0.000005 0.0102435 −739.71 4.29 0.98
petG 0 0 0.8509 −156.93 0.000002 0 999 −155.55 2.77 1.00
petL 0 0 0.1008 −136.46 0.000002 0 313.224 −135.59 1.74 1.00
psaA 0 0.0018 0.0084 −3309.32 0 0.001795 0.0001 −3306.01 6.62 0.88
psaB 0.0002 0.0031 0.0672 −3293.87 0 0.003743 0.0001 −3286.29 15.16 0.23
psaI 0 0 0.8811 −177.10 0 0.000005 0.106004 −174.86 4.48 0.97
psbA 0.0001 0.0037 0.0157 −1554.95 0 0.003857 0.0001 −1552.80 4.31 0.98
psbB 0.0002 0.0021 0.0878 −2235.59 0 0.002695 0.0001 −2229.89 11.39 0.50
psbC 0.0001 0.0024 0.0259 −2138.08 0 0.002509 0.0001 −2131.91 12.33 0.42
psbD 0 0 0.075 −1533.73 0 0.000005 0.0001 −1529.39 8.68 0.73
psbH 0 0 0.12 −321.61 0.000002 0.000006 0.0978274 −319.64 3.93 0.98
psbI 0 0 0.0001 −152.19 0 0.000003 0.0001 −152.19 0.005686 1
psbJ 0 0 0.1454 −163.03 0.000002 0 113.399 −162.51 1.05 1.00
psbK 0 0 0.3253 −268.48 0 0.000005 0.0001 −265.68 5.59 0.94
psbM 0 0 0.0001 −126.66 0.000002 0 212.117 −126.66 0.000884 1.00
psbT 0 0 0.245 −142.20 0 0.000004 0.0001 −141.67 1.05 1.00
rbcL 0.0004 0.0018 0.1906 −2281.62 0 0.002963 0.0001 −2274.83 13.59 0.33
rpl14 0 0 0.037 −529.92 0.000001 0.000006 0.0001 −526.77 6.30 0.90
rpl16 0 0 0.1546 −631.29 0.000001 0.000005 0.0001 −624.98 12.62 0.40
rpl2 0 0 0.183 −1139.62 0.000002 0 31.3706 −1138.57 2.10 1.00
rpl20 0 0 0.4022 −628.11 0.000002 0.000004 9.55435 −623.99 8.24 0.77
rpl22 0 0 0.4957 −931.12 0 0.000007 0.0001 −919.97 22.31 0.03
rpl23 0 0 999 −396.07 0.000002 0.000001 55.6975 −396.07 0.00 1.00
rpl33 0 0 0.1364 −307.30 0.000002 0 491.843 −303.04 8.51 0.74
rpoA 0.001 0.006 0.1692 −1751.50 0.000001 0.010121 0.0001 −1742.58 17.85 0.12
rpoB 0.0003 0.0029 0.1019 −4816.32 0.000418 0.001825 0.0461232 −4807.91 16.82 0.16
rpoC1 0.0007 0.004 0.1796 −3224.37 0.000638 0.002151 0.0743791 −3216.52 15.71 0.20
rpoC2 0.0012 0.0042 0.3139 −6585.10 0.001256 0.004513 0.215304 −6576.06 18.07 0.11
rps11 0 0 0.0797 −634.65 0 0.000005 0.0001 −631.31 6.68 0.88
rps14 0 0 0.1102 −420.73 0 0.000005 0.0001 −418.47 4.51 0.97
rps15 0 0 0.6425 −434.79 0.000002 0 76.3582 −430.76 8.08 0.78
rps16 0 0 0.4244 −380.25 0.000002 0 15.7794 −377.71 5.07 0.96
rps18 0 0 0.0918 −411.02 0.000002 0 192.024 −408.76 4.52 0.97
rps2 0 0 0.4331 −1203.16 0.000002 0.000006 0.134231 −1198.26 9.80 0.63
rps3 0.0005 0.005 0.1081 −1071.79 0.000001 0.005949 0.0001 −1064.71 14.16 0.29
rps4 0.0007 0.0051 0.1334 −944.70 0.000001 0.000006 0.0001 −937.89 13.61 0.33
rps8 0 0 0.2502 −588.72 0 0.000006 0.0001 −586.69 4.08 0.98
ycf1 0.0035 0.0068 0.5214 −11057.96 0.003664 0.004828 0.495128 −11050.66 14.59 0.26
ycf2 0 0 0.3282 −246.36 0 0.000005 0.0001 −244.96 2.79 1.00
ycf3 0 0 0.1983 −696.68 0.000001 0.000004 0.20605 −693.90 5.54 0.94
ycf4 0 0 0.036 −802.98 0 0.000005 0.0001 −799.72 6.51 0.89
ycf15 0.0001 0.0002 0.552 −9655.78 0.000185 0.000006 0.402698 −9648.33 14.90306 0.246781
petB 0 0.0058 0.0001 −991.11 0.000001 0.005832 0.0001 −991.11 0.000242 1
petN 0 0 0.2706 −116.86 0.000002 0 198.276 −116.86 0.001416 1
psaC 0 0 0.0001 −375.50 0 0.000005 0.0001 −375.50 0.00008 1
psaJ 0 0 0.0001 −208.38 0 0.000004 0.0001 −208.38 0.00036 1
psbE 0 0 0.0001 −350.96 0 0.000005 0.0001 −350.96 0.000432 1
psbF 0 0 0.0001 −159.00 0 0.000005 0.0001 −159.00 0.000294 1
psbL 0 0 0.0001 −162.62 0 0.000007 0.0001 −162.62 0 1
psbN 0 0 0.0001 −180.08 0 0.000004 0.0001 −180.08 0.000258 1
psbZ 0 0 0.0001 −247.62 0 0.000005 0.0001 −247.62 0.000616 1
rpl36 0 0 0.0001 −152.86 0.000001 0.000002 0.520692 −152.86 0.00048 1
rps12 0 0 0.0001 −496.22 0.000002 0 60.2915 −496.22 0.000092 1
rps19 0 0 0.0001 −404.64 0.000001 0.000005 0.0001 −404.64 0.000202 1
rps7 0 0 0.0001 −612.36 0.000002 0 78.7221 −612.36 0.002164 1