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. 2022 Jun 3;13:3112. doi: 10.1038/s41467-022-30779-6

Fig. 5. MD simulations relate capture of ions with lattice formation.

Fig. 5

a Superimposed structures of the 4 × 5 J10 crystal structure (translucent gray) with a snapshot from the J10 simulation in solution (tan). The arsenic binding sites (green spheres) in the crystal structure near the branching point overlap with spontaneously formed potassium (blue spheres) binding sites in the solution structure simulations. b Graphs showing the incidence of ion capture near the branching point in simulations of all 36 junction sequences. The consensus “fatal” junctions (J11, 12, 13, 17, 18, and 27) show no ability for ion capture with the exception of J17 (asterisk) which did so to a negligible degree compared to the crystallizing junctions. All other junctions resulting in crystals demonstrated the ability for ion capture to a significant degree, with only a single outlier (J7, diamond). J7 robustly crystallized, but showed no ability to capture ions in both experiments and simulations, suggesting the ion binding is not essential for crystallization of this single junction.