Table 2.
Editing class | miRNA | Cytoband | Position in mature miRNA | Editing in seed | Base substitution | Adjusted P | # detected individuals | Mean-editing level |
---|---|---|---|---|---|---|---|---|
A-to-I | miR-589-3p | 7p22.1 | 6 | Yes | A → G | 5.4 × 10−12 | 0† | 0.046 |
miR-6503-3p | 11q12.2 | 7 | Yes | A → G | < 1 × 10−300 | 25 | 0.36 | |
miR-411-5p | 14q32.31 | 5 | Yes | A → G | 1.0 × 10−55 | 3 | 0.033 | |
miR-381-3p | 14q32.31 | 4 | Yes | A → G | < 1 × 10−300 | 21 | 0.17 | |
miR-421 | Xq13.2 | 14 | No | A → G | 5.9 × 10−4 | 0† | 0.0035 | |
miR-652-5p | Xq23 | 11 | No | A → G | 2.1 × 10−11 | 0† | 0.011 | |
miR-505-5p | Xq27.1 | 4 | Yes | A → G | 0.037 | 0† | 0.0032 | |
C-to-U | miR-425-5p | 3p21.31 | 14 | No | C → U | < 1 × 10−300 | 86 | 0.026 |
miR-487b-3p | 14q32.31 | 14 | No | C → U | 3.4 × 10−5 | 0† | 0.0034 | |
miR-652-3p | Xq23 | 11 | No | C → U | 1.9 × 10−18 | 1 | 0.013 | |
Non-canonical | miR-1843 | 1q25.1 | 16 | No | C → A | 2.6 × 10−7 | 0† | 0.012 |
miR-30d-5p | 8q24.22 | 9 | No | U → C | 6.4 × 10−7 | 0† | 0.0052 | |
miR-379-3p | 14q32.31 | 11 | No | G → A | 1.6 × 10−7 | 1 | 0.017 | |
miR-324-5p | 17p13.1 | 5 | Yes | U → C | 7.3 × 10−4 | 0† | 0.0025 | |
miR-144-5p | 17q11.2 | 15 | No | A → C | 1.4 × 10−51 | 3 | 0.0023 | |
miR-223-5p | Xq12 | 14 | No | A → C | 2.2 × 10−12 | 1 | 0.0030 |
Novel editing sites are highlighted in bold.
Adjusted P, P-values calculated with sRNA-seq reads combined across all individuals and adjusted by the Benjamini–Hochberg method.
# detected individuals, the number of individuals in which a given miRNA-editing event was significantly detected (see Materials and Methods).
†The editing event was detected only when sRNA-seq reads were combined across all individuals.