Table 2.
Simulated system | RMSD (nm) |
|||||
---|---|---|---|---|---|---|
Protein Cα |
Ligand heavy |
Binding site |
RMSF (nm) |
Rg (nm) |
No. of H-bonds |
|
atoms | Atoms | Cα atoms | ||||
wt-atv | 0.146 | 0.052 | 0.111 | 0.088 | 1.830 | 0.886 |
dlt-atv | 0.208 | 0.066 | 0.149 | 0.088 | 1.860 | 0.043 |
pls-atv | 0.165 | 0.098 | 0.152 | 0.092 | 1.850 | 0.052 |
lmb-atv | 0.159 | 0.101 | 0.146 | 0.088 | 1.840 | 0.857 |
wt-prz | 0.142 | 0.054 | 0.135 | 0.091 | 1.840 | 0.348 |
dlt-prz | 0.134 | 0.077 | 0.130 | 0.083 | 1.830 | 0.395 |
pls-prz | 0.157 | 0.110 | 0.148 | 0.089 | 1.840 | 0.250 |
lmb-prz | 0.183 | 0.101 | 0.177 | 0.102 | 1.860 | 0.173 |
wt-k22 | 0.127 | 0.067 | 0.114 | 0.085 | 1.840 | 0.605 |
dlt-k22 | 0.146 | 0.088 | 0.140 | 0.090 | 1.850 | 0.695 |
pls-k22 | 0.158 | 0.086 | 0.145 | 0.089 | 1.840 | 0.514 |
lmb-k22 | 0.152 | 0.075 | 0.122 | 0.097 | 1.840 | 1.183 |
* RMSD values were calculated in protein-ligand complexes.